Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G091100 Theobroma cacao HOM05D002599 ORTHO05D001895 6.8e-72 273.9 135 100.0
Gorai.013G039500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.6e-34 147.9 131 55.0
Gohir.A13G036650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.7e-33 144.8 132 54.5
Gohir.D13G034950 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.7e-33 144.8 131 54.2
Sabra01G0166800 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-18 96.7 110 44.5
COL.COLO4_11750 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.6e-17 93.2 138 41.3
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-17 92.4 123 43.1
Sabra03G0006600 Salix brachista HOM05D009888 ORTHO05D001895 3.6e-17 92.0 130 44.6
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 3.6e-17 92.0 130 43.8
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 8.1e-17 90.9 128 43.0
Sabra03G0007700 Salix brachista HOM05D009888 ORTHO05D001895 1.1e-16 90.5 130 43.1
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 4.0e-16 88.6 128 42.2
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 6.9e-16 87.8 114 42.1
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.2e-15 87.0 130 43.1
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-15 87.0 114 41.2
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-15 86.7 116 43.1
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-15 86.3 116 41.4
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 3.4e-15 85.5 128 42.2
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.5e-15 85.1 130 41.5
Potri.003G013026 Populus trichocarpa HOM05D009888 ORTHO05D001895 7.6e-15 84.3 130 40.8
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.9e-15 84.0 130 40.8
Potri.003G016733 Populus trichocarpa HOM05D009888 ORTHO05D001895 2.2e-14 82.8 130 41.5
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.9e-14 82.4 130 40.8
Sabra03G0006900 Salix brachista HOM05D009888 ORTHO05D001895 2.9e-14 82.4 127 39.4
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.8e-14 82.0 114 41.2
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.4e-14 80.9 112 40.2
Sabra01G0167700 Salix brachista HOM05D008886 ORTHO05D001895 8.4e-14 80.9 107 40.2
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.1e-13 80.5 128 40.6
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-13 80.5 120 36.7
Sabra03G0006400 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-13 80.5 124 41.1
Sabra07G0097000 Salix brachista HOM05D000527 ORTHO05D017379 1.9e-13 79.7 111 41.4
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-13 79.3 118 39.0
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-13 79.3 118 39.0
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.4e-13 79.3 118 39.0
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-13 79.3 104 42.3
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-13 78.6 115 38.3
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-13 78.6 112 39.3
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-13 78.6 114 42.1
Manes.07G019800 Manihot esculenta HOM05D009888 ORTHO05D001895 5.5e-13 78.2 128 40.6
Sabra03G0006100 Salix brachista HOM05D002599 ORTHO05D001895 7.1e-13 77.8 124 40.3
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 9.3e-13 77.4 125 41.6
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 9.3e-13 77.4 132 38.6
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-12 77.0 126 38.1
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-12 76.6 124 36.3
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 1.6e-12 76.6 121 37.2
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 2.7e-12 75.9 99 41.4
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-12 75.9 114 39.5
Sabra01G0167200 Salix brachista HOM05D008886 ORTHO05D001895 3.5e-12 75.5 93 38.7
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.6e-12 75.1 114 39.5
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 6.0e-12 74.7 102 40.2
Potri.004G011000 Populus trichocarpa HOM05D008886 ORTHO05D001895 6.0e-12 74.7 106 40.6
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 6.0e-12 74.7 118 37.3
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.9e-12 74.3 118 37.3
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.9e-12 74.3 112 41.1
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.9e-12 74.3 112 40.2
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-11 73.9 101 42.6
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-11 73.9 120 39.2
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 1.0e-11 73.9 113 39.8
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.3e-11 73.6 108 42.6
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-11 73.6 130 39.2
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-11 73.6 101 43.6
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-11 73.6 114 39.5
Sabra03G0007300 Salix brachista HOM05D009888 ORTHO05D001895 1.3e-11 73.6 130 39.2
Potri.011G005300 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.8e-11 73.2 107 38.3
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-11 73.2 106 36.8
Sabra07G0096500 Salix brachista HOM05D008886 ORTHO05D001895 1.8e-11 73.2 104 39.4
Potri.004G221300 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.3e-11 72.8 106 35.8
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-11 72.8 112 40.2
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.3e-11 72.8 115 37.4
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-11 72.4 115 38.3
Potri.007G119400 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.0e-11 72.4 86 41.9
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 3.0e-11 72.4 114 39.5
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 3.0e-11 72.4 116 41.4
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-11 72.0 114 39.5
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-11 72.0 114 39.5
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-11 72.0 114 39.5
Gorai.005G241300 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.1e-11 71.6 86 43.0
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.7e-11 71.2 115 34.8
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.7e-11 71.2 101 42.6
Potri.011G005601 Populus trichocarpa HOM05D008886 ORTHO05D001895 6.7e-11 71.2 107 37.4
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 6.7e-11 71.2 114 41.2
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.7e-11 70.9 115 38.3
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.7e-11 70.9 115 38.3
Gorai.005G241200 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.7e-11 70.9 127 37.8
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 1.1e-10 70.5 117 37.6
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-10 70.5 106 36.8
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.5e-10 70.1 98 39.8
Potri.011G006050 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.5e-10 70.1 107 36.4
Sabra07G0096600 Salix brachista HOM05D000527 ORTHO05D017379 1.5e-10 70.1 86 40.7
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 1.9e-10 69.7 113 35.4
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-10 69.7 116 36.2
Potri.011G005200 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.9e-10 69.7 105 37.1
Sabra03G0007200 Salix brachista HOM05D009888 ORTHO05D001895 1.9e-10 69.7 130 37.7
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.5e-10 69.3 118 35.6
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.5e-10 69.3 118 35.6
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-10 69.3 117 35.9
Sabra07G0096900 Salix brachista HOM05D008886 ORTHO05D001895 2.5e-10 69.3 104 38.5
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-10 68.9 116 33.6
Gohir.A01G200500 Gossypium hirsutum HOM05D002599 ORTHO05D025152 3.3e-10 68.9 112 34.8
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.3e-10 68.9 119 38.7
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.3e-10 68.6 99 45.5
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.3e-10 68.6 120 39.2
Potri.011G004900 Populus trichocarpa HOM05D008886 ORTHO05D001895 4.3e-10 68.6 105 37.1
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.6e-10 68.2 87 42.5
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.6e-10 68.2 117 36.8
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 5.6e-10 68.2 119 35.3
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 5.6e-10 68.2 120 39.2
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 7.4e-10 67.8 99 39.4
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.4e-10 67.8 113 37.2
Sabra03G0007600 Salix brachista HOM05D009888 ORTHO05D001895 7.4e-10 67.8 130 37.7
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 7.4e-10 67.8 113 38.9
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 7.4e-10 67.8 129 35.7
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 7.4e-10 67.8 116 36.2
Potri.003G013601 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.3e-09 67.0 130 36.9
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-09 67.0 113 36.3
Gohir.A03G192100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-09 66.6 96 40.6
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-09 66.6 116 35.3
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.6e-09 66.6 116 35.3
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-09 66.2 119 37.0
Sabra01G0167400 Salix brachista HOM05D008886 ORTHO05D001895 2.8e-09 65.9 87 36.8
Sabra11G0004000 Salix brachista HOM05D008886 ORTHO05D001895 2.8e-09 65.9 107 37.4
Sabra11G0004600 Salix brachista HOM05D008886 ORTHO05D001895 2.8e-09 65.9 107 37.4
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-09 65.9 119 38.7
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.7e-09 65.5 116 32.8
Gohir.D01G190550 Gossypium hirsutum HOM05D002599 ORTHO05D025152 3.7e-09 65.5 112 33.9
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.7e-09 65.5 116 32.8
Gorai.002G234300 Gossypium raimondii HOM05D002599 ORTHO05D025152 3.7e-09 65.5 112 33.9
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 3.7e-09 65.5 108 38.0
Potri.004G010850 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.7e-09 65.5 120 33.3
Potri.011G005500 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.7e-09 65.5 105 34.3
Atru.chr6.323 Acer truncatum HOM05D002599 ORTHO05D001895 4.8e-09 65.1 88 39.8
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.8e-09 65.1 119 35.3
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-09 65.1 84 42.9
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.2e-09 64.7 110 38.2
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 6.2e-09 64.7 122 35.2
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-08 63.9 114 37.7
Sabra11G0004100 Salix brachista HOM05D008886 ORTHO05D001895 1.4e-08 63.5 93 39.8
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-08 63.2 110 37.3
Potri.011G005400 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.8e-08 63.2 105 35.2
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 1.8e-08 63.2 117 35.0
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-08 62.8 129 31.0
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-08 62.8 110 36.4
Manes.02G167801 Manihot esculenta HOM05D009888 ORTHO05D001895 2.4e-08 62.8 123 35.8
Manes.10G121200 Manihot esculenta HOM05D009888 ORTHO05D001895 2.4e-08 62.8 128 36.7
Sabra01G0164100 Salix brachista HOM05D002599 ORTHO05D001895 2.4e-08 62.8 124 34.7
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.1e-08 62.4 103 35.9
Sabra03G0009500 Salix brachista HOM05D002599 ORTHO05D001895 3.1e-08 62.4 118 35.6
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.1e-08 62.4 118 37.3
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.0e-08 62.0 121 35.5
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 4.0e-08 62.0 130 33.1
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.3e-08 61.6 132 34.1
Sabra03G0009200 Salix brachista HOM05D002599 ORTHO05D001895 5.3e-08 61.6 117 35.0
Sabra03G0009800 Salix brachista HOM05D002599 ORTHO05D001895 5.3e-08 61.6 117 35.0
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 6.9e-08 61.2 115 32.2
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 6.9e-08 61.2 115 32.2
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.9e-08 61.2 116 35.3
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 9.0e-08 60.8 116 33.6
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-07 60.5 127 33.1
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-07 60.5 118 33.1
Manes.07G021700 Manihot esculenta HOM05D002599 ORTHO05D001895 1.5e-07 60.1 113 38.1
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-07 60.1 108 35.2
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.0e-07 59.7 118 36.4
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-07 59.3 129 30.2
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.6e-07 59.3 129 30.2
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-07 59.3 97 36.1
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-07 58.9 131 30.5
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 4.5e-07 58.5 124 33.9
Atru.chr4.3203 Acer truncatum HOM05D002599 ORTHO05D001895 7.6e-07 57.8 96 33.3
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 1.3e-06 57.0 121 35.5
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.9e-06 55.1 119 31.9
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 8.4e-06 54.3 97 34.0


User provided reference genes

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