Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.4e-187 658.7 334 100.0
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 2.4e-179 632.1 333 95.2
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.6e-178 629.4 333 94.9
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.3e-177 626.3 333 94.6
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 6.6e-177 624.0 333 94.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.3e-174 615.5 335 92.2
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 9.6e-168 593.6 335 88.7
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.6e-167 592.8 334 87.7
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 4.7e-167 591.3 334 88.0
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 4.7e-167 591.3 334 87.7
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.1e-166 590.1 333 87.1
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.1e-166 588.6 327 89.3
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.0e-166 588.2 333 86.8
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.2e-165 586.6 332 88.0
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 4.2e-163 578.2 320 88.1
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 5.4e-163 577.8 333 85.3
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 5.4e-163 577.8 326 87.1
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 5.4e-163 577.8 327 87.5
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 7.1e-163 577.4 335 86.9
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.1e-162 575.9 331 86.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.7e-162 575.5 336 86.0
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 6.0e-162 574.3 330 85.8
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.3e-161 573.2 333 84.1
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 2.3e-161 572.4 333 85.3
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.3e-161 572.4 325 85.2
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 2.3e-161 572.4 319 86.8
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.0e-161 572.0 333 84.4
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 3.9e-161 571.6 369 78.6
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 5.1e-161 571.2 330 84.8
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.9e-160 569.3 333 83.8
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.3e-160 568.2 331 84.0
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 5.6e-160 567.8 337 84.0
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 5.6e-160 567.8 329 84.5
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.6e-159 565.1 332 83.4
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.6e-159 565.1 328 84.5
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 6.2e-159 564.3 328 85.1
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 6.2e-159 564.3 330 83.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 8.1e-159 563.9 328 85.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.8e-158 562.8 334 85.3
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.8e-158 562.8 331 84.0
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 2.4e-158 562.4 335 83.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.1e-158 562.0 327 84.4
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 6.9e-158 560.8 331 84.0
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 6.9e-158 560.8 324 84.3
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 2.0e-157 559.3 331 82.8
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 2.6e-157 558.9 332 82.5
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.6e-157 558.9 326 85.9
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 3.4e-157 558.5 337 84.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.8e-157 557.8 337 82.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 5.8e-157 557.8 320 86.2
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 5.8e-157 557.8 335 82.7
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 1.3e-156 556.6 339 81.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.3e-156 556.6 324 84.6
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.7e-156 556.2 320 86.2
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.7e-156 556.2 332 81.9
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.8e-156 555.1 345 80.0
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.8e-156 555.1 327 83.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 4.9e-156 554.7 317 87.1
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 6.4e-156 554.3 322 83.2
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-155 552.7 337 81.3
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.9e-155 552.7 337 81.3
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.2e-155 552.0 334 81.4
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 5.4e-155 551.2 323 83.9
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.4e-155 551.2 370 75.7
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.0e-153 547.0 345 78.6
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-153 546.6 345 79.4
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.7e-153 546.2 324 82.7
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.7e-153 546.2 377 72.9
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.3e-153 545.8 323 84.5
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.3e-153 545.8 323 84.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 3.9e-153 545.0 328 81.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 3.9e-153 545.0 335 80.0
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 5.1e-153 544.7 335 79.7
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 6.6e-153 544.3 332 81.3
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.9e-152 542.7 332 79.5
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.5e-152 542.3 334 80.2
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 4.3e-152 541.6 334 80.2
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 7.3e-152 540.8 331 80.7
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 6.2e-151 537.7 329 80.9
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 8.1e-151 537.3 333 80.5
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 8.1e-151 537.3 374 72.7
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.8e-150 536.2 331 80.4
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.8e-150 536.2 320 81.6
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.2e-148 529.3 403 70.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 4.9e-148 528.1 304 84.9
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 6.4e-148 527.7 320 78.4
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.1e-147 526.9 324 80.9
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 7.9e-146 520.8 318 82.7
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.6e-144 514.6 334 77.2
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 4.8e-143 511.5 330 76.1
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.8e-140 501.9 333 76.6
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 8.4e-140 500.7 339 75.8
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.9e-137 491.9 318 76.4
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 3.9e-137 491.9 331 72.2
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 2.2e-132 476.1 330 70.6
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.2e-131 471.1 336 69.0
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 9.0e-126 454.1 327 69.1
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 7.7e-125 451.1 338 66.3
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 7.7e-125 451.1 250 87.6
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 5.5e-123 444.9 250 85.6
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 5.1e-121 438.3 249 86.7
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 4.3e-120 435.3 243 85.6
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 8.2e-119 431.0 369 65.0
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.4e-118 430.3 250 82.0
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 5.9e-117 424.9 320 69.7
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.2e-114 417.2 316 69.3
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.6e-114 416.8 331 65.9
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.6e-114 416.8 333 68.2
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 9.1e-110 401.0 242 78.5
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 5.7e-96 355.1 321 58.3
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 2.3e-89 333.2 232 72.0
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 4.0e-89 332.4 198 80.8
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 5.9e-77 292.0 215 73.0
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 4.4e-72 275.8 325 47.1
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 7.3e-67 258.5 197 66.0
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 9.5e-67 258.1 263 50.2
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 4.7e-66 255.8 136 89.7
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 2.0e-64 250.4 137 86.1
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.9e-63 246.5 311 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 5.2e-57 225.7 239 50.6
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 8.9e-57 224.9 130 80.0
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.7e-44 181.8 130 70.0
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.5e-43 180.3 130 69.2
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 5.3e-41 172.6 120 70.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-40 170.6 134 66.4
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.5e-40 169.5 107 80.4
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-40 169.5 123 69.1
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-40 169.5 123 69.1
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 4.9e-39 166.0 123 67.5
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-35 153.3 162 49.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.6e-34 151.0 107 71.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 9.0e-33 145.2 207 47.8
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.7e-26 123.2 97 64.9
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 9.0e-25 118.6 73 78.1
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.5e-22 110.5 197 42.6
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 4.2e-22 109.8 78 66.7
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.9e-21 105.5 67 79.1
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 5.1e-20 102.8 77 67.5
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.1e-19 101.7 65 78.5
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 5.7e-19 99.4 61 78.7
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.6e-18 97.8 62 79.0
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.1e-17 95.1 86 57.0
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.6e-13 81.3 53 73.6
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 9.7e-11 72.0 51 66.7
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 6.3e-10 69.3 50 66.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.1e-09 68.6 54 66.7
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 2.4e-09 67.4 60 63.3
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 1.1e-06 58.5 167 28.1
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 9.4e-06 55.5 163 28.8


User provided reference genes

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