Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 6.8e-63 245.4 194 100.0
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.9e-29 133.7 141 56.7
COL.COLO4_37463 Corchorus olitorius HOM05D007556 ORTHO05D002252 8.4e-21 105.5 92 66.3
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 9.3e-20 102.1 88 68.2
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 3.9e-18 96.7 95 52.6
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 8.7e-18 95.5 145 53.1
COL.COLO4_03329 Corchorus olitorius HOM05D007556 ORTHO05D002252 4.3e-17 93.2 87 62.1
COL.COLO4_25910 Corchorus olitorius HOM05D007556 ORTHO05D002252 1.3e-16 91.7 86 58.1
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.6e-16 91.3 96 54.2
COL.COLO4_25915 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.8e-16 90.5 86 59.3
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 6.2e-16 89.4 96 52.1
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.8e-15 87.8 102 47.1
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 3.1e-15 87.0 90 50.0
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 6.9e-15 85.9 97 55.7
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 6.9e-15 85.9 97 54.6
COL.COLO4_11794 Corchorus olitorius HOM05D007556 ORTHO05D002252 3.4e-14 83.6 86 57.0
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 4.5e-14 83.2 93 46.2
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 4.5e-14 83.2 96 47.9
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 5.8e-14 82.8 93 47.3
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 7.6e-14 82.4 106 45.3
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 1.0e-13 82.0 93 47.3
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.0e-13 82.0 95 48.4
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 1.7e-13 81.3 96 52.1
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 2.2e-13 80.9 96 45.8
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 3.8e-13 80.1 94 50.0
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 8.4e-13 79.0 102 43.1
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 1.1e-12 78.6 93 46.2
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 5.5e-12 76.3 105 41.9
TWI79G1510 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 5.5e-12 76.3 83 50.6
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 7.1e-12 75.9 94 46.8
CSS0039349 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 1.2e-11 75.1 105 41.0
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.2e-11 75.1 85 47.1
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.6e-11 74.7 116 43.1
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 3.5e-11 73.6 85 45.9
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.5e-11 73.6 94 45.7
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.5e-11 73.6 92 44.6
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 4.6e-11 73.2 84 51.2
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 7.9e-11 72.4 86 46.5
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 3.0e-10 70.5 94 44.7
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.9e-10 70.1 96 38.5
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.1e-10 69.7 114 40.4
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 6.7e-10 69.3 94 42.6
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 8.7e-10 68.9 97 46.4
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 8.7e-10 68.9 96 45.8
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 1.5e-09 68.2 96 41.7
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 1.9e-09 67.8 95 44.2
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 2.5e-09 67.4 95 43.2
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 5.7e-09 66.2 66 47.0
DCAR_022107 Daucus carota HOM05D007556 ORTHO05D002252 7.4e-09 65.9 96 38.5
Lj3g0003579 Lotus japonicus HOM05D010359 ORTHO05D002252 7.4e-09 65.9 98 35.7
CiPaw.06G136300 Carya illinoinensis HOM05D007556 ORTHO05D002252 1.3e-08 65.1 110 33.6
VMungo1127G0650 Vigna mungo HOM05D007556 ORTHO05D002252 1.6e-08 64.7 86 38.4
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 2.1e-08 64.3 109 40.4
SGA_v2.0_scaffold55G19792 Striga asiatica HOM05D007556 ORTHO05D002252 2.8e-08 63.9 96 34.4
Lj3g0013453 Lotus japonicus HOM05D010359 ORTHO05D002252 3.7e-08 63.5 88 37.5
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 8.2e-08 62.4 99 42.4
CiPaw.06G136400 Carya illinoinensis HOM05D007556 ORTHO05D002252 1.1e-07 62.0 104 35.6
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.1e-07 62.0 110 38.2
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.1e-07 62.0 89 38.2
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 1.1e-07 62.0 94 43.6
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 1.4e-07 61.6 80 40.0
PGR042G3705 Punica granatum HOM05D007556 ORTHO05D002252 1.4e-07 61.6 106 37.7
CANSAT56G0346 Cannabis sativa HOM05D007556 ORTHO05D002252 1.8e-07 61.2 99 38.4
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.8e-07 61.2 97 44.3
PGR042G1382 Punica granatum HOM05D007556 ORTHO05D002252 2.4e-07 60.8 103 36.9
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.1e-07 60.5 89 37.1
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.1e-07 60.1 89 37.1
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 4.1e-07 60.1 59 52.5
Cc05_g01670 Coffea canephora HOM05D007556 ORTHO05D002252 5.3e-07 59.7 101 41.6
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 5.3e-07 59.7 93 40.9
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.3e-07 59.7 78 46.2
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 6.9e-07 59.3 91 40.7
TPR.G24483 Trifolium pratense HOM05D010359 ORTHO05D002252 9.0e-07 58.9 95 40.0
Medtr4g069810 Medicago truncatula HOM05D010359 ORTHO05D002252 1.2e-06 58.5 93 36.6
Psat0s1116g0120 Pisum sativum HOM05D010359 ORTHO05D002252 1.2e-06 58.5 86 41.9
Sabra09G0087900 Salix brachista HOM05D007556 ORTHO05D002252 1.2e-06 58.5 62 48.4
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 2.0e-06 57.8 60 45.0
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.6e-06 57.4 86 41.9
Peaxi162Scf00152g00130 Petunia axillaris HOM05D007556 ORTHO05D002252 2.6e-06 57.4 58 50.0
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 2.6e-06 57.4 98 35.7
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 2.6e-06 57.4 98 36.7
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 4.5e-06 56.6 88 37.5
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 4.5e-06 56.6 96 41.7
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.9e-06 56.2 86 41.9
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 7.6e-06 55.8 80 36.2
Aqoxy2G01755 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 1.0e-05 55.5 103 35.9
Dinv42079 Davidia involucrata HOM05D034181 ORTHO05D022252 1.0e-05 55.5 100 35.0
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.0e-05 55.5 42 57.1
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.0e-05 55.5 51 52.9
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 1.0e-05 55.5 70 41.4
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.0e-05 55.5 86 40.7


User provided reference genes

Program Settings