Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 3.6e-39 164.5 85 100.0
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 2.6e-29 131.7 88 84.1
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.9e-28 128.3 82 75.6
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.9e-28 127.5 82 75.6
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 8.4e-28 126.7 82 74.4
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 5.5e-27 124.0 83 80.7
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 7.1e-27 123.6 82 78.0
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 3.5e-26 121.3 82 76.8
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 4.6e-26 120.9 84 78.6
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.6e-26 120.9 82 76.8
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 5.3e-22 107.5 92 62.0
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 5.3e-22 107.5 95 64.2
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 6.9e-22 107.1 90 68.9
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 2.0e-21 105.5 93 64.5
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 2.6e-21 105.1 93 65.6
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 1.0e-20 103.2 93 63.4
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 3.8e-20 101.3 95 66.3
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 6.5e-20 100.5 93 59.1
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 6.5e-20 100.5 93 62.4
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 1.1e-19 99.8 93 60.2
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 1.4e-19 99.4 90 60.0
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 3.2e-19 98.2 85 63.5
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 3.2e-19 98.2 95 66.3
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 5.5e-19 97.4 95 62.1
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 5.5e-19 97.4 95 62.1
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 7.1e-19 97.1 95 64.2
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 7.1e-19 97.1 91 59.3
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 7.1e-19 97.1 95 63.2
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 1.6e-18 95.9 92 59.8
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 2.7e-18 95.1 92 58.7
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 4.6e-18 94.4 89 60.7
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 1.0e-17 93.2 89 60.7
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 1.3e-17 92.8 93 57.0
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 1.8e-17 92.4 92 55.4
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 2.3e-17 92.0 90 56.7
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 2.3e-17 92.0 90 57.8
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 3.0e-17 91.7 84 60.7
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 3.9e-17 91.3 92 55.4
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 3.9e-17 91.3 92 55.4
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 5.1e-17 90.9 91 54.9
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 5.1e-17 90.9 96 56.2
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 8.7e-17 90.1 95 52.6
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.5e-16 88.6 89 53.9
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 3.3e-16 88.2 91 57.1
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.3e-16 88.2 93 55.9
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 9.7e-16 86.7 90 52.2
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 2.2e-15 85.5 82 53.7
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.8e-15 85.1 99 52.5
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 3.7e-15 84.7 86 59.3
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 3.7e-15 84.7 84 58.3
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 4.8e-15 84.3 94 58.5
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 6.3e-15 84.0 82 62.2
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 8.2e-15 83.6 88 58.0
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 8.2e-15 83.6 93 49.5
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 1.8e-14 82.4 83 51.8
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 2.4e-14 82.0 76 53.9
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 5.3e-14 80.9 88 50.0
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 6.9e-14 80.5 91 54.9
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 1.5e-13 79.3 89 52.8
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 3.4e-13 78.2 94 52.1
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 5.9e-13 77.4 99 50.5
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 5.9e-13 77.4 58 63.8
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 7.7e-13 77.0 102 52.9
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 1.7e-12 75.9 101 50.5
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 1.7e-12 75.9 87 52.9
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.9e-12 75.1 58 63.8
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.9e-12 75.1 58 63.8
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 5.0e-12 74.3 93 49.5
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 5.0e-12 74.3 85 54.1
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 5.0e-12 74.3 94 48.9
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 1.1e-11 73.2 88 51.1
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.1e-11 73.2 103 44.7
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 1.4e-11 72.8 85 48.2
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 1.9e-11 72.4 86 51.2
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 4.2e-11 71.2 56 60.7
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 5.5e-11 70.9 86 48.8
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 1.6e-10 69.3 97 46.4
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 2.1e-10 68.9 84 56.0
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 2.1e-10 68.9 90 52.2
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 3.6e-10 68.2 85 51.8
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 4.6e-10 67.8 93 40.9
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 6.1e-10 67.4 87 47.1
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 2.3e-09 65.5 86 47.7
COL.COLO4_25982 Corchorus olitorius HOM05D066844 ORTHO05D007620 3.0e-09 65.1 65 64.6
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 5.1e-09 64.3 86 47.7
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 5.1e-09 64.3 86 47.7
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 6.7e-09 63.9 86 46.5
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 1.1e-08 63.2 86 44.2
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 1.9e-08 62.4 80 45.0
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 1.9e-08 62.4 86 44.2
ATR0585G050 Amborella trichopoda HOM05D006691 ORTHO05D007620 2.5e-08 62.0 85 47.1
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 2.5e-08 62.0 86 45.3
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 2.5e-08 62.0 35 74.3
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 5.7e-08 60.8 93 40.9
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 9.7e-08 60.1 86 44.2
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 9.7e-08 60.1 80 42.5
Glyma.06G010000 Glycine max HOM05D006691 ORTHO05D007620 1.3e-07 59.7 74 43.2
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.7e-07 59.3 86 41.9
arahy.Tifrunner.gnm1.ann1.GKZX65 Arachis hypogaea HOM05D006691 ORTHO05D007620 2.2e-07 58.9 93 40.9
Sc18g0005100 Simmondsia chinensis HOM05D006691 ORTHO05D007620 2.2e-07 58.9 96 37.5
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 3.7e-07 58.2 87 44.8
BcaB03g11823 Brassica carinata HOM05D006691 ORTHO05D007620 4.8e-07 57.8 86 40.7
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 4.8e-07 57.8 80 38.8
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 4.8e-07 57.8 80 38.8
arahy.Tifrunner.gnm1.ann1.JP7MPK Arachis hypogaea HOM05D006691 ORTHO05D007620 1.4e-06 56.2 93 39.8
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 1.4e-06 56.2 66 40.9
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 3.1e-06 55.1 80 38.8
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 3.1e-06 55.1 80 38.8
Lalb_Chr03g0032901 Lupinus albus HOM05D006691 ORTHO05D007620 3.1e-06 55.1 36 58.3
Glyma.08G235100 Glycine max HOM05D006691 ORTHO05D007620 9.1e-06 53.5 86 40.7


User provided reference genes

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