Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 1.0e-63 246.5 118 100.0
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.4e-60 236.1 118 94.9
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 2.3e-60 235.3 118 94.1
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.0e-60 234.6 118 94.1
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.0e-60 234.6 118 94.1
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.8e-60 233.8 118 94.1
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.9e-60 233.4 118 94.1
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.5e-59 232.6 118 92.4
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.6e-59 231.9 118 93.2
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.1e-57 226.5 118 89.8
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 9.2e-57 223.4 118 89.0
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 1.2e-56 223.0 114 91.2
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 2.0e-56 222.2 115 90.4
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 3.5e-56 221.5 114 90.4
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.5e-56 221.5 113 91.2
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.9e-56 220.7 118 86.4
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 7.8e-56 220.3 117 88.0
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 7.8e-56 220.3 116 87.9
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 1.3e-55 219.5 116 87.1
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.3e-55 219.5 116 87.1
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 3.9e-55 218.0 118 84.7
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 8.6e-55 216.9 116 85.3
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 8.6e-55 216.9 120 87.5
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.5e-54 216.1 116 85.3
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.9e-54 215.7 118 83.9
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.9e-54 215.7 117 84.6
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.9e-54 215.7 115 87.8
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.3e-54 214.9 116 85.3
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 3.3e-54 214.9 116 84.5
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 3.3e-54 214.9 115 87.0
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 5.6e-54 214.2 115 87.0
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 5.6e-54 214.2 114 86.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 7.3e-54 213.8 118 83.9
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 9.5e-54 213.4 114 86.0
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 9.5e-54 213.4 118 83.1
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 9.5e-54 213.4 113 88.5
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.6e-53 212.6 115 87.0
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.6e-53 212.6 118 83.9
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.6e-53 212.6 114 86.8
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 2.1e-53 212.2 117 85.5
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 2.1e-53 212.2 119 84.9
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 3.6e-53 211.5 114 85.1
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.6e-53 211.5 115 84.3
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 4.7e-53 211.1 117 83.8
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 4.7e-53 211.1 116 84.5
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 6.2e-53 210.7 116 83.6
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 6.2e-53 210.7 116 83.6
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 6.2e-53 210.7 116 83.6
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 6.2e-53 210.7 116 83.6
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 6.2e-53 210.7 115 86.1
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 8.0e-53 210.3 117 84.6
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 8.0e-53 210.3 114 86.0
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.0e-52 209.9 113 87.6
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.0e-52 209.9 116 84.5
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.4e-52 209.5 116 83.6
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.8e-52 209.1 116 82.8
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.3e-52 208.8 113 85.8
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-52 208.8 116 82.8
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.3e-52 208.8 116 82.8
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 2.3e-52 208.8 116 82.8
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.3e-52 208.8 114 84.2
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.3e-52 208.8 115 82.6
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.3e-52 208.8 118 83.1
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 4.0e-52 208.0 116 82.8
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 5.2e-52 207.6 113 84.1
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 6.8e-52 207.2 115 81.7
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 8.9e-52 206.8 116 84.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-51 206.5 112 86.6
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.2e-51 206.5 118 80.5
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 81.0
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 81.0
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 81.0
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 81.0
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 81.0
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 81.0
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.0e-51 205.7 115 84.3
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 80.9
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 2.6e-51 205.3 115 85.2
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 4.4e-51 204.5 113 85.0
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 7.5e-51 203.8 118 82.2
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 9.8e-51 203.4 115 81.7
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 81.0
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-50 203.0 116 81.0
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.9e-50 201.8 112 82.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 3.7e-50 201.4 115 82.6
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 3.7e-50 201.4 117 79.5
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.7e-50 201.4 113 84.1
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 3.7e-50 201.4 115 80.9
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.9e-50 201.1 114 82.5
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 6.4e-50 200.7 110 85.5
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 6.4e-50 200.7 115 78.3
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 8.3e-50 200.3 112 81.2
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 8.3e-50 200.3 110 84.5
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.4e-49 199.5 117 78.6
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 1.9e-49 199.1 115 77.4
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-49 199.1 111 81.1
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.9e-49 199.1 111 81.1
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 3.2e-49 198.4 137 71.5
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 9.2e-49 196.8 115 82.6
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.0e-48 194.1 105 86.7
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.3e-47 193.0 111 76.6
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 5.0e-47 191.0 151 63.6
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 6.6e-47 190.7 104 84.6
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 8.6e-47 190.3 118 76.3
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.1e-46 189.9 112 78.6
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.9e-46 189.1 109 79.8
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 9.5e-46 186.8 104 85.6
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.2e-45 186.4 105 81.0
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.1e-44 183.3 182 54.4
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.0e-44 181.4 113 70.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 5.2e-44 181.0 113 74.3
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 6.8e-44 180.6 113 74.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 6.8e-44 180.6 104 77.9
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 3.4e-43 178.3 102 79.4
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 5.8e-43 177.6 102 78.4
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 7.5e-43 177.2 96 86.5
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 4.9e-42 174.5 100 79.0
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.9e-41 172.6 101 79.2
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.2e-40 169.9 125 66.4
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.7e-39 166.0 91 86.8
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.1e-37 159.1 115 67.8
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 4.9e-34 147.9 110 61.8
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.1e-33 146.7 118 63.6
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 3.2e-33 145.2 112 57.1
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 4.1e-33 144.8 116 62.1
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.7e-32 142.1 85 76.5
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 4.6e-32 141.4 111 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.8e-28 129.4 109 53.2
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.2e-27 126.7 60 91.7
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.6e-27 124.0 85 74.1
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-25 117.9 114 48.2
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 9.3e-25 117.1 57 84.2
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 2.1e-24 115.9 58 84.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.1e-23 111.3 60 81.7
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.9e-22 109.4 101 55.4
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.9e-22 109.4 103 49.5
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 9.6e-22 107.1 102 50.0
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.8e-21 105.5 83 66.3
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 7.6e-19 97.4 146 42.5
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.3e-18 96.7 113 46.0
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 8.4e-18 94.0 96 47.9
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.4e-17 92.4 53 84.9
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 5.4e-17 91.3 58 82.8
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 2.1e-16 89.4 55 74.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.5e-14 82.4 46 78.3
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 7.4e-14 80.9 61 68.9
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 7.1e-09 64.3 86 37.2
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 7.1e-09 64.3 83 49.4


User provided reference genes

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