Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 1.8e-204 715.7 355 100.0
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 2.1e-181 639.0 349 89.7
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.7e-178 629.4 350 89.1
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 2.2e-178 629.0 350 89.4
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 4.5e-176 621.3 390 81.0
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 1.5e-163 579.7 350 82.6
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 2.0e-163 579.3 346 81.8
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 5.8e-163 577.8 350 79.7
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 2.9e-162 575.5 318 89.3
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 3.2e-161 572.0 351 79.8
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 4.6e-160 568.2 348 78.7
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 7.8e-160 567.4 352 79.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.0e-159 567.0 350 79.7
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.0e-159 567.0 347 79.8
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 3.9e-159 565.1 347 79.5
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 3.3e-158 562.0 350 79.7
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 3.3e-158 562.0 362 78.2
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.2e-157 560.1 352 78.7
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 4.7e-157 558.1 344 80.5
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 8.1e-157 557.4 346 78.3
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.1e-156 557.0 347 79.0
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 1.1e-156 557.0 342 79.2
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.8e-156 556.2 373 74.0
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 3.4e-155 552.0 353 77.9
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 3.4e-155 552.0 349 76.2
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 4.4e-155 551.6 354 77.4
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 7.5e-155 550.8 349 77.1
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 1.9e-153 546.2 349 75.6
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.9e-153 546.2 344 77.9
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.4e-153 545.8 353 77.6
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.4e-153 545.8 353 77.6
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 3.2e-153 545.4 302 87.7
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 7.1e-153 544.3 349 75.4
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 9.2e-153 543.9 362 76.5
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.6e-152 543.1 350 75.4
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.5e-152 542.0 343 76.7
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 3.5e-152 542.0 343 74.9
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 4.6e-152 541.6 347 75.8
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 1.3e-151 540.0 349 75.6
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.7e-151 539.7 351 75.8
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 3.0e-151 538.9 349 74.2
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.0e-151 538.9 357 74.8
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 3.9e-151 538.5 357 74.8
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 3.9e-151 538.5 396 71.5
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 3.9e-151 538.5 343 77.3
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 5.1e-151 538.1 351 75.8
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 8.6e-151 537.3 352 74.1
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.2e-149 533.5 303 84.8
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.2e-149 533.5 349 74.8
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.2e-149 533.5 350 75.1
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 2.8e-149 532.3 351 74.6
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 2.8e-149 532.3 351 74.6
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 2.8e-149 532.3 353 75.1
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 3.6e-149 531.9 312 80.8
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 4.7e-149 531.6 305 84.6
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 6.2e-149 531.2 303 84.2
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 6.2e-149 531.2 342 76.6
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.1e-148 530.4 346 74.0
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 3.4e-147 525.4 357 73.7
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 4.4e-147 525.0 347 75.2
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 7.6e-147 524.2 351 73.8
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 9.9e-147 523.9 357 73.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 9.9e-147 523.9 372 70.4
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 1.3e-146 523.5 303 84.5
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 2.9e-146 522.3 352 73.3
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 4.9e-146 521.5 351 73.5
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 4.9e-146 521.5 351 73.2
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 5.4e-145 518.1 308 80.2
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.7e-143 513.1 312 77.6
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 2.3e-143 512.7 325 75.1
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 5.1e-143 511.5 391 68.0
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 1.9e-142 509.6 304 79.9
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 6.2e-141 504.6 302 81.1
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 8.1e-141 504.2 302 80.8
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 9.9e-139 497.3 309 78.3
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 3.8e-138 495.4 341 74.5
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.4e-137 493.4 382 67.0
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 3.3e-134 482.3 303 75.9
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.4e-129 466.8 321 73.2
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 1.9e-129 466.5 304 73.7
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 2.4e-129 466.1 363 66.1
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 3.2e-129 465.7 340 68.8
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.1e-128 463.0 345 68.1
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 2.7e-128 462.6 280 77.5
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 7.6e-123 444.5 292 74.7
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.2e-120 437.2 310 70.6
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.1e-118 430.6 303 65.3
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.1e-118 430.6 303 65.3
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 2.1e-117 426.4 311 64.3
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 2.6e-115 419.5 302 64.2
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 2.6e-115 419.5 286 72.0
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 3.2e-113 412.5 371 59.6
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 4.3e-110 402.1 267 75.7
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 3.2e-105 386.0 249 78.3
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.1e-102 377.5 281 65.5
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 3.0e-95 352.8 303 55.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 2.1e-88 330.1 306 51.3
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 2.7e-88 329.7 259 63.3
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 4.1e-84 315.8 379 50.7
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 7.0e-84 315.1 184 81.5
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 9.1e-84 314.7 235 68.1
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.4e-79 300.8 226 68.6
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 9.7e-78 294.7 311 48.2
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 1.8e-76 290.4 245 57.6
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 5.2e-71 272.3 239 61.5
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-68 264.2 206 65.5
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.9e-58 229.6 124 85.5
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.9e-58 229.6 124 85.5
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 3.7e-53 213.0 122 77.0
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-52 211.1 122 76.2
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 3.9e-50 203.0 182 61.5
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 1.1e-49 201.4 137 73.0
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.6e-40 169.9 103 72.8
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.6e-38 162.2 304 31.9
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 7.1e-36 155.6 297 37.4
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 9.2e-36 155.2 133 64.7
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 8.6e-34 148.7 144 57.6
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 7.3e-33 145.6 125 60.0
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 1.6e-32 144.4 79 83.5
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 4.0e-31 139.8 102 67.6
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-28 131.3 186 42.5
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 7.1e-28 129.0 117 58.1
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 1.3e-26 124.8 187 43.3
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 3.6e-24 116.7 102 59.8
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 1.5e-22 111.3 114 53.5
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 4.9e-21 106.3 71 63.4
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 3.9e-18 96.7 184 37.0
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.4e-12 78.2 64 60.9
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 9.3e-12 75.5 46 76.1
COL.COLO4_26276 Corchorus olitorius HOM05D000089 ORTHO05D000726 2.8e-08 63.9 319 25.1
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 8.1e-08 62.4 58 58.6
Duzib093G1615 Durio zibethinus HOM05D000089 ORTHO05D000726 1.1e-07 62.0 323 24.8
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 1.0e-05 55.5 230 24.8


User provided reference genes

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