Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G073100 Theobroma cacao HOM05D000586 ORTHO05D008681 6.8e-111 404.1 213 100.0
Duzib052G0483 Durio zibethinus HOM05D000586 ORTHO05D008681 2.3e-98 362.5 213 90.6
Gorai.001G244200 Gossypium raimondii HOM05D000586 ORTHO05D008681 4.8e-96 354.8 214 89.3
Gohir.D13G090500 Gossypium hirsutum HOM05D000586 ORTHO05D008681 2.4e-95 352.4 214 88.8
Gohir.A13G086800 Gossypium hirsutum HOM05D000586 ORTHO05D008681 3.2e-84 315.5 214 82.7
Cpa.g.sc150.2 Carica papaya HOM05D000586 ORTHO05D008681 1.9e-81 306.2 226 77.0
Duzib132G1196 Durio zibethinus HOM05D000586 ORTHO05D008681 4.3e-81 305.1 236 72.9
Ciclev10029227m.g Citrus clementina HOM05D000586 ORTHO05D008681 6.5e-77 291.2 212 77.4
COL.COLO4_10614 Corchorus olitorius HOM05D000586 ORTHO05D008681 7.2e-76 287.7 213 78.4
Manes.11G092006 Manihot esculenta HOM05D000586 ORTHO05D008681 2.1e-75 286.2 216 75.9
Haze_02225 Corylus avellana HOM05D000586 ORTHO05D008681 3.5e-75 285.4 223 73.1
Prupe.8G082300 Prunus persica HOM05D000586 ORTHO05D008681 4.6e-75 285.0 230 74.3
Carub.0007s0556 Capsella rubella HOM05D000586 ORTHO05D008681 6.7e-74 281.2 211 73.9
Potri.004G164200 Populus trichocarpa HOM05D000586 ORTHO05D008681 8.7e-74 280.8 204 77.5
QL11p046751 Quercus lobata HOM05D000586 ORTHO05D008681 1.1e-73 280.4 227 70.5
FAN24G2793 Fragaria x ananassa HOM05D000586 ORTHO05D008681 1.9e-73 279.6 217 74.2
PGR042G2570 Punica granatum HOM05D000586 ORTHO05D008681 3.3e-73 278.9 223 69.5
FvH4_2g10740 Fragaria vesca HOM05D000586 ORTHO05D008681 5.7e-73 278.1 217 74.2
Sabra04G0110300 Salix brachista HOM05D000586 ORTHO05D008681 5.7e-73 278.1 215 74.4
FAN20G2293 Fragaria x ananassa HOM05D000586 ORTHO05D008681 7.4e-73 277.7 217 74.2
RcHm_v2.0_Chr6g0268531 Rosa chinensis HOM05D000586 ORTHO05D008681 7.4e-73 277.7 217 73.7
THA.LOC104807288 Tarenaya hassleriana HOM05D000586 ORTHO05D008681 1.6e-72 276.6 216 72.7
AT4G34730 Arabidopsis thaliana HOM05D000586 ORTHO05D008681 4.8e-72 275.0 211 73.9
CARHR243030 Cardamine hirsuta HOM05D000586 ORTHO05D008681 6.3e-72 274.6 211 73.5
AL7G16470 Arabidopsis lyrata HOM05D000586 ORTHO05D008681 8.2e-72 274.2 211 73.5
TAR381G1606 Trochodendron aralioides HOM05D000586 ORTHO05D008681 8.2e-72 274.2 231 70.1
Thhalv10026220m.g Eutrema salsugineum HOM05D000586 ORTHO05D008681 1.4e-71 273.5 221 72.9
Dinv41988 Davidia involucrata HOM05D000586 ORTHO05D008681 1.8e-71 273.1 233 66.5
CiPaw.05G074600 Carya illinoinensis HOM05D000586 ORTHO05D008681 2.4e-71 272.7 212 73.6
Sp7g32510 Schrenkiella parvula HOM05D000586 ORTHO05D008681 2.4e-71 272.7 221 71.9
MD00G1066800 Malus domestica HOM05D000586 ORTHO05D008681 4.1e-71 271.9 232 69.0
BolC7t46503H Brassica oleracea HOM05D000586 ORTHO05D008681 6.9e-71 271.2 212 73.1
Nn6g32309 Nelumbo nucifera HOM05D000586 ORTHO05D008681 9.0e-71 270.8 181 81.2
C07p60740 Brassica napus HOM05D000586 ORTHO05D001010 3.4e-70 268.9 211 72.0
Aa31LG2G15790 Aethionema arabicum HOM05D000586 ORTHO05D008681 7.7e-70 267.7 211 71.6
BcaNung04297 Brassica carinata HOM05D000586 ORTHO05D008681 1.0e-69 267.3 212 73.1
Dinv23444 Davidia involucrata HOM05D000586 ORTHO05D008681 1.3e-69 266.9 234 66.7
Actinidia20476 Actinidia chinensis HOM05D000586 ORTHO05D008681 1.7e-69 266.5 231 67.1
BcaNung00666 Brassica carinata HOM05D000586 ORTHO05D008681 8.5e-69 264.2 212 72.6
Eucgr.G01743 Eucalyptus grandis HOM05D000586 ORTHO05D008681 8.5e-69 264.2 168 86.3
Sed0014971 Sechium edule HOM05D000586 ORTHO05D008681 1.1e-68 263.8 225 68.4
C01p04060 Brassica napus HOM05D000586 ORTHO05D003356 5.5e-68 261.5 210 71.9
A03p63110 Brassica napus HOM05D000586 ORTHO05D001010 1.2e-67 260.4 220 69.1
BolC1t00397H Brassica oleracea HOM05D000586 ORTHO05D003356 1.2e-67 260.4 209 72.2
BraA03t15387Z Brassica rapa HOM05D000586 ORTHO05D008681 1.2e-67 260.4 220 69.1
SalBow6G4654 Salvia bowleyana HOM05D000586 ORTHO05D008681 1.2e-67 260.4 233 67.8
A01p03780 Brassica napus HOM05D000586 ORTHO05D003356 3.6e-67 258.8 210 71.0
BraA01t00363Z Brassica rapa HOM05D000586 ORTHO05D008681 3.6e-67 258.8 212 71.2
CsaV3_2G015360 Cucumis sativus L. HOM05D000586 ORTHO05D008681 1.0e-66 257.3 197 73.6
ClCG11G003770 Citrullus lanatus HOM05D000586 ORTHO05D008681 1.4e-66 256.9 232 67.2
FAN15G3000 Fragaria x ananassa HOM05D000586 ORTHO05D008681 1.4e-66 256.9 168 83.3
MBI05_g26502_MAGBIO Magnolia biondii HOM05D000586 ORTHO05D008681 3.0e-66 255.8 227 67.8
Nitab4.5_0010885g0020 Nicotiana tabacum HOM05D000586 ORTHO05D008681 5.7e-65 251.5 173 81.5
EL10Ac9g21609 Beta vulgaris HOM05D000586 ORTHO05D008681 2.8e-64 249.2 222 69.8
Nitab4.5_0002096g0050 Nicotiana tabacum HOM05D000586 ORTHO05D008681 3.7e-64 248.8 171 80.7
PGSC0003DMG400001616 Solanum tuberosum HOM05D000586 ORTHO05D008681 6.3e-64 248.1 197 72.6
MSTRG.20023 Avicennia marina HOM05D000586 ORTHO05D008681 8.2e-64 247.7 228 65.8
Peaxi162Scf00362g01176 Petunia axillaris HOM05D000586 ORTHO05D008681 8.2e-64 247.7 173 81.5
Lsat_1_v5_gn_4_67621 Lactuca sativa HOM05D000586 ORTHO05D008681 4.1e-63 245.4 182 74.2
Aqoxy5G01445 Aquilegia oxysepala HOM05D000586 ORTHO05D008681 6.9e-63 244.6 213 69.0
Oeu020677.1 Olea europaea HOM05D000586 ORTHO05D008681 1.2e-62 243.8 174 78.7
Solyc01g110550.3 Solanum lycopersicum HOM05D000586 ORTHO05D008681 1.5e-62 243.4 221 67.4
DCAR_022927 Daucus carota HOM05D000586 ORTHO05D008681 2.0e-62 243.0 220 64.5
Lj1g0002953 Lotus japonicus HOM05D000586 ORTHO05D008681 5.9e-62 241.5 196 69.9
Phvul.009G002100 Phaseolus vulgaris HOM05D000586 ORTHO05D008681 1.7e-61 240.0 209 65.6
Glyma.06G007300 Glycine max HOM05D000586 ORTHO05D008681 2.2e-61 239.6 171 77.8
VMungo1309G1236 Vigna mungo HOM05D000586 ORTHO05D008681 2.2e-61 239.6 211 65.4
MELO3C020750.2 Cucumis melo HOM05D000586 ORTHO05D008681 2.9e-61 239.2 195 70.8
Sopen01g052670 Solanum pennellii HOM05D000586 ORTHO05D008681 3.8e-61 238.8 214 67.8
arahy.Tifrunner.gnm1.ann1.I5P0FU Arachis hypogaea HOM05D000586 ORTHO05D008681 3.2e-60 235.7 165 79.4
arahy.Tifrunner.gnm1.ann1.89FNHL Arachis hypogaea HOM05D000586 ORTHO05D008681 4.2e-60 235.3 170 78.2
Migut.B00127 Erythranthe guttata HOM05D000586 ORTHO05D008681 4.2e-60 235.3 176 79.0
Lalb_Chr16g0391381 Lupinus albus HOM05D000586 ORTHO05D008681 4.2e-60 235.3 172 77.3
PSO170G6416 Papaver somniferum HOM05D000586 ORTHO05D008681 5.5e-60 235.0 199 65.8
PSO210G2611 Papaver somniferum HOM05D000586 ORTHO05D008681 2.7e-59 232.6 199 65.3
Ah.01g018630 Amaranthus hybridus HOM05D000586 ORTHO05D008681 6.1e-59 231.5 172 73.8
ECA234G3975 Erigeron canadensis HOM05D000586 ORTHO05D008681 6.1e-59 231.5 160 81.2
Zm00001eb377790 Zea mays HOM05D000586 ORTHO05D008681 1.0e-58 230.7 182 68.7
Sc08g0000980 Simmondsia chinensis HOM05D000586 ORTHO05D008681 1.4e-58 230.3 215 64.2
CAN.G1329.7 Capsicum annuum HOM05D000586 ORTHO05D008681 3.9e-58 228.8 180 74.4
Psat5g000280 Pisum sativum HOM05D000586 ORTHO05D008681 3.9e-58 228.8 182 69.2
Medtr3g117600 Medicago truncatula HOM05D000586 ORTHO05D008681 6.7e-58 228.0 190 68.9
HanXRQChr10g0294191 Helianthus annuus HOM05D000586 ORTHO05D008681 8.8e-58 227.6 169 76.9
Hund06294 Selenicereus undatus HOM05D000586 ORTHO05D008681 8.8e-58 227.6 178 71.9
AUR62010365 Chenopodium quinoa HOM05D000586 ORTHO05D008681 5.7e-57 224.9 219 64.4
Ca_15328_v3 Cicer arietinum L. HOM05D000586 ORTHO05D008681 5.7e-57 224.9 181 70.2
Hma1.2p1_0032F.1_g019990 Hydrangea macrophylla HOM05D000586 ORTHO05D008681 1.3e-56 223.8 126 91.3
CDE01G0237 Ceratophyllum demersum HOM05D000586 ORTHO05D008681 4.8e-56 221.9 184 71.2
AUR62016853 Chenopodium quinoa HOM05D000586 ORTHO05D008681 4.8e-56 221.9 223 63.2
HPP92_020672 Vanilla planifolia HOM05D000586 ORTHO05D008681 6.3e-56 221.5 143 83.2
Os06g0137600 Oryza sativa ssp. japonica HOM05D000586 ORTHO05D008681 1.2e-54 217.2 206 61.2
CANSAT11G1696 Cannabis sativa HOM05D000586 ORTHO05D008681 1.6e-54 216.9 139 84.2
GSVIVG01024154001 Vitis vinifera HOM05D000586 ORTHO05D008681 3.5e-54 215.7 149 81.9
unitig_60.g25431 Utricularia gibba HOM05D000586 ORTHO05D008681 5.9e-54 214.9 162 77.2
Lj9A383T66 Lonicera japonica HOM05D000586 ORTHO05D008681 1.3e-53 213.8 190 64.7
Cc02_g16800 Coffea canephora HOM05D000586 ORTHO05D008681 2.5e-52 209.5 150 78.0
Oeu046110.1 Olea europaea HOM05D000586 ORTHO05D008681 9.4e-52 207.6 158 77.8
VMungo1309G1424 Vigna mungo HOM05D000586 ORTHO05D008681 2.7e-51 206.1 124 83.9
vmacro02046 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 3.0e-50 202.6 122 86.9
vmacro22695 Vaccinium macrocarpon HOM05D000586 ORTHO05D008681 3.0e-50 202.6 122 86.9
Lj9A385G33 Lonicera japonica HOM05D000586 ORTHO05D008681 1.1e-49 200.7 178 65.2
SMO337G0057 Selaginella moellendorffii HOM05D000586 ORTHO05D008681 1.3e-48 197.2 168 64.3
Rhsim11G0184900 Rhododendron simsii HOM05D000586 ORTHO05D008681 3.7e-48 195.7 189 61.4
SGA_v2.0_scaffold58G20435 Striga asiatica HOM05D000586 ORTHO05D008681 1.6e-46 190.3 269 47.2
AagrBONN_evm.TU.Sc2ySwM_228.435 Anthoceros agrestis HOM05D000586 ORTHO05D008681 2.1e-43 179.9 163 60.7
CBR_g38914 Chara braunii HOM05D000586 ORTHO05D008681 3.0e-42 176.0 137 62.8
Pp3c12_16410 Physcomitrium patens HOM05D000586 ORTHO05D008681 1.5e-41 173.7 173 54.3
TPR.G32182 Trifolium pratense HOM05D000586 ORTHO05D008681 9.8e-41 171.0 150 65.3
Mapoly0005s0278 Marchantia polymorpha HOM05D000586 ORTHO05D008681 6.3e-40 168.3 138 60.9
CSS0047409 Camellia sinensis var. sinensis HOM05D000586 ORTHO05D008681 4.5e-38 162.2 108 77.8
Sed0014045 Sechium edule HOM05D000586 ORTHO05D008681 2.8e-32 142.9 168 55.4
MCO15G163 Micromonas commoda HOM05D000586 ORTHO05D008681 8.3e-32 141.4 170 46.5
Atru.chr5.3178 Acer truncatum HOM05D000586 ORTHO05D008681 9.2e-31 137.9 99 75.8
ATR0910G002 Amborella trichopoda HOM05D000586 ORTHO05D008681 3.6e-27 125.9 120 62.5
SEGI_30788 Sequoiadendron giganteum HOM05D000586 ORTHO05D008681 8.0e-27 124.8 98 64.3
Nn017s41473 Nelumbo nucifera HOM05D000586 ORTHO05D008681 7.5e-25 118.2 74 83.8
Cre02.g145000 Chlamydomonas reinhardtii HOM05D000586 ORTHO05D008681 2.4e-23 113.2 165 42.4
PRCOL_00004217 Prasinoderma coloniale HOM05D000586 ORTHO05D008681 2.0e-22 110.2 167 40.7
VMungo0720G0167 Vigna mungo HOM05D000028 ORTHO05D001812 3.5e-22 109.4 90 67.8
MD10G1061600 Malus domestica HOM05D000586 ORTHO05D008681 2.1e-19 100.1 148 46.6
BcaB07g33434 Brassica carinata HOM05D000586 ORTHO05D008681 3.6e-19 99.4 71 76.1


User provided reference genes

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