Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 0.0e+00 1538.9 1071 100.0
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 0.0e+00 1206.4 1071 84.9
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 8.8e-311 1070.5 1066 79.7
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 9.5e-302 1040.4 1067 79.1
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.4e-300 1036.6 1066 79.1
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 4.4e-299 1031.6 1021 80.1
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.4e-297 1024.6 1067 78.4
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 5.5e-233 812.0 1078 64.8
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.2e-224 784.3 1096 61.0
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.5e-222 777.3 1074 64.5
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 7.4e-222 775.0 1082 64.8
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 6.3e-221 771.9 1133 62.4
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 4.5e-219 765.8 1081 65.1
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.1e-217 761.1 1077 60.1
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 1.4e-217 760.8 1080 64.5
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.4e-215 754.2 1084 59.7
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 8.2e-213 745.0 1121 53.7
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 1.2e-211 741.1 1080 58.7
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 6.7e-207 725.3 1102 55.5
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 7.0e-204 715.3 1070 62.4
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 5.4e-196 689.1 1008 65.7
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 2.6e-190 670.2 1098 60.0
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 3.8e-186 656.4 1100 61.9
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.1e-184 649.0 1088 60.2
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 4.0e-183 646.4 1088 59.2
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 3.7e-181 639.8 1094 53.3
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 1.8e-180 637.5 1086 58.8
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 4.6e-179 632.9 1162 51.7
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 6.0e-179 632.5 1091 55.3
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 6.0e-179 632.5 1084 60.1
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 6.6e-178 629.0 1083 58.0
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.1e-177 628.2 1080 60.8
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 5.6e-177 625.9 1109 58.5
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 9.5e-177 625.2 1087 59.8
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.2e-176 624.8 1072 60.3
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 9.2e-172 608.6 1053 60.8
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 1.6e-171 607.8 1070 58.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 4.6e-171 606.3 1102 57.7
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 1.1e-169 601.7 1057 60.5
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 1.1e-169 601.7 1146 51.0
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 2.1e-168 597.4 1098 54.3
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 1.4e-167 594.7 1085 59.2
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 8.9e-167 592.0 1091 57.9
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.5e-166 591.3 1087 58.5
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 4.4e-166 589.7 1051 59.4
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 9.9e-166 588.6 1158 55.3
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 1.3e-165 588.2 1157 55.1
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 6.4e-165 585.9 1078 60.2
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.5e-163 580.1 1093 58.0
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.0e-162 577.0 1082 59.0
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 3.1e-159 567.0 1102 57.1
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 8.9e-159 565.5 1108 55.1
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 4.9e-157 559.7 1088 58.4
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.1e-156 558.5 849 68.1
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 5.4e-156 556.2 1062 57.5
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 5.4e-156 556.2 1084 56.6
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 5.4e-156 556.2 1101 56.5
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.6e-155 554.7 1066 56.0
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 1.7e-154 551.2 716 77.1
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.7e-154 551.2 1096 53.7
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.7e-154 551.2 1085 57.3
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 3.9e-154 550.1 1096 57.2
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.9e-153 547.7 1085 57.1
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 2.0e-150 537.7 1079 55.9
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 7.6e-150 535.8 1074 57.8
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 7.6e-150 535.8 1108 56.4
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 1.4e-148 531.6 1103 56.2
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 2.1e-147 527.7 1080 56.6
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.7e-147 527.3 1117 56.3
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 1.0e-146 525.4 1073 57.3
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 3.0e-146 523.9 1062 56.7
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 3.3e-145 520.4 1031 58.6
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 1.6e-144 518.1 1087 56.9
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 2.1e-144 517.7 1026 56.4
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.0e-142 511.1 1101 56.1
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 5.8e-142 509.6 996 54.8
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 1.9e-140 504.6 1114 55.0
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 3.2e-140 503.8 1095 55.3
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 4.6e-139 500.0 885 63.8
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 6.0e-139 499.6 1082 55.5
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 1.5e-137 495.0 836 58.4
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.5e-137 495.0 1040 50.5
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 8.1e-136 489.2 934 60.7
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 8.1e-136 489.2 842 65.2
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.1e-135 488.8 1080 49.6
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 9.0e-135 485.7 847 64.9
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.5e-134 485.0 968 46.7
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 3.2e-132 477.2 606 74.3
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 4.2e-132 476.9 1081 54.8
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.5e-124 449.9 1068 50.8
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.1e-121 442.2 749 67.6
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 9.0e-119 432.6 697 64.8
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.9e-117 427.6 997 51.9
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 4.2e-116 423.7 839 54.2
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 5.3e-111 406.8 684 55.4
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 4.2e-108 397.1 969 56.3
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 7.2e-84 316.6 262 59.9
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 4.1e-71 274.2 638 51.6
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 4.1e-71 274.2 280 52.5
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 6.6e-61 240.4 165 72.1
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.7e-56 225.7 931 40.4
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 6.2e-51 207.2 257 87.9
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 5.2e-50 204.1 721 44.7
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 3.2e-47 194.9 707 47.0
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 4.1e-47 194.5 297 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 5.4e-47 194.1 695 58.3
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.2e-42 177.6 278 75.2
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 7.6e-41 173.7 271 38.0
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 3.8e-40 171.4 279 37.6
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.5e-38 164.9 123 65.9
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.0e-38 164.1 1016 45.9
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 5.6e-36 157.5 312 67.9
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.3e-34 151.0 128 61.7
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 5.3e-34 151.0 119 62.2
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.9e-34 150.6 1092 42.9
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 8.4e-32 143.7 107 64.5
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 1.1e-31 143.3 102 63.7
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 5.6e-28 131.0 287 31.7
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 5.3e-26 124.4 692 49.4
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 2.2e-24 119.0 109 56.0
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 3.5e-22 111.7 94 54.3
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.7e-19 101.7 100 73.0
Ciclev10028828m.g Citrus clementina HOM05D005996 ORTHO05D007507 5.3e-18 97.8 312 34.6
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 6.0e-14 84.3 241 30.7
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 1.0e-08 67.0 61 54.1
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 9.3e-07 60.5 39 74.4
SEGI_16644 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 1.2e-06 60.1 38 65.8


User provided reference genes

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