Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.4e-165 586.3 298 100.0
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 7.1e-130 467.6 266 88.7
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 1.7e-128 463.0 266 87.6
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.0e-128 462.2 266 88.0
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.1e-126 456.1 303 78.9
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.2e-121 440.3 266 83.5
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.7e-120 436.4 268 83.6
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.5e-119 432.6 267 84.3
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.6e-118 429.9 266 80.1
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.6e-118 429.9 266 80.1
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 4.0e-117 425.2 266 81.6
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.3e-115 420.2 267 82.0
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 2.9e-115 419.1 264 79.2
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.1e-114 417.2 266 79.7
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.1e-114 417.2 268 79.1
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 2.4e-114 416.0 265 80.4
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 4.2e-114 415.2 266 79.3
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 4.2e-114 415.2 266 77.4
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 9.3e-114 414.1 266 77.8
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.6e-113 413.3 266 81.2
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 1.6e-113 413.3 266 78.9
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 2.7e-113 412.5 266 77.4
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.0e-112 410.6 268 78.4
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.3e-112 410.2 266 77.4
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.3e-111 405.2 266 78.9
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.3e-110 403.7 266 76.3
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 6.2e-110 401.4 266 75.9
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.1e-110 401.0 257 78.6
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.1e-109 400.6 266 77.8
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.4e-109 400.2 266 76.7
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 1.4e-109 400.2 267 75.7
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 5.3e-109 398.3 266 75.9
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 5.3e-109 398.3 252 79.4
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 5.3e-109 398.3 267 75.3
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 6.9e-109 397.9 268 75.7
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 1.2e-108 397.1 268 75.7
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 5.8e-108 394.8 269 74.3
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 5.8e-108 394.8 267 75.3
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 7.6e-108 394.4 267 75.3
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 2.2e-107 392.9 266 74.1
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 2.2e-107 392.9 267 74.5
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 2.9e-107 392.5 244 81.6
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 3.8e-107 392.1 266 73.3
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 4.9e-107 391.7 266 74.4
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 8.4e-107 391.0 268 76.1
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 1.9e-106 389.8 265 74.7
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 4.2e-106 388.7 244 81.1
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 5.4e-106 388.3 247 76.5
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.6e-105 386.7 270 75.2
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 1.6e-105 386.7 246 77.6
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 2.7e-105 386.0 266 73.3
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 6.0e-105 384.8 264 73.5
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 6.0e-105 384.8 252 75.4
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 7.9e-105 384.4 252 75.4
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 7.9e-105 384.4 284 71.1
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 1.0e-104 384.0 229 83.8
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.3e-104 383.6 266 72.6
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.3e-104 383.6 252 74.2
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.3e-104 383.6 256 74.6
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.7e-104 383.3 265 75.8
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 6.6e-104 381.3 254 75.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 4.3e-103 378.6 286 69.6
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 4.3e-103 378.6 264 70.8
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 2.8e-102 375.9 266 70.7
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 2.8e-102 375.9 232 82.8
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 8.1e-102 374.4 252 75.0
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 8.1e-102 374.4 259 73.4
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 8.1e-102 374.4 244 77.0
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 8.1e-102 374.4 264 70.8
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.8e-101 373.2 235 78.3
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 3.1e-101 372.5 256 73.8
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 5.3e-101 371.7 231 82.7
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 6.9e-101 371.3 264 71.2
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.2e-100 370.5 234 79.9
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.2e-100 370.5 259 75.7
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.5e-100 370.2 266 70.7
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 3.4e-100 369.0 248 77.8
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 3.4e-100 369.0 338 59.8
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.5e-100 368.6 264 71.6
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 5.8e-100 368.2 234 78.6
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 5.8e-100 368.2 235 78.7
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.3e-99 367.1 267 68.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 4.9e-99 365.2 253 71.1
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.1e-98 364.0 267 68.9
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.9e-98 363.2 267 68.5
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 9.3e-98 360.9 267 68.9
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 9.3e-98 360.9 266 69.2
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.6e-97 360.1 254 72.0
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 2.1e-97 359.8 254 70.1
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.1e-97 359.8 255 69.4
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.7e-97 359.4 267 68.5
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.5e-97 359.0 268 69.0
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.3e-96 357.1 249 72.3
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.3e-96 356.3 267 68.2
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.3e-96 356.3 252 71.0
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 3.9e-96 355.5 216 79.2
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 6.7e-96 354.8 336 60.7
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 8.7e-96 354.4 265 67.5
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 4.3e-95 352.1 213 82.2
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 5.6e-95 351.7 267 65.9
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.3e-94 350.5 266 66.5
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.8e-94 349.4 255 67.5
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 3.7e-94 349.0 301 62.5
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.1e-93 347.4 267 65.5
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 3.1e-93 345.9 283 64.0
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 4.0e-93 345.5 267 65.2
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 4.0e-93 345.5 279 63.8
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 5.3e-93 345.1 267 65.9
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 5.3e-93 345.1 266 66.2
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.5e-92 343.6 267 64.8
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.0e-92 343.2 267 65.2
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.6e-92 342.8 213 79.3
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 2.6e-92 342.8 255 65.9
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 3.4e-92 342.4 267 64.8
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 4.5e-92 342.0 221 77.4
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 7.6e-92 341.3 280 63.2
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.3e-91 340.5 213 78.9
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.8e-91 339.0 247 68.0
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.4e-90 337.0 212 78.8
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.6e-89 333.6 249 68.7
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 2.1e-89 333.2 275 66.2
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 9.6e-87 324.3 267 62.2
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.8e-85 320.1 249 63.9
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 6.9e-85 318.2 253 68.4
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 9.0e-85 317.8 266 65.0
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.5e-84 317.0 247 63.2
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.5e-84 317.0 263 64.6
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 4.5e-84 315.5 201 81.6
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 7.6e-84 314.7 266 65.0
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.0e-83 314.3 266 65.0
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.6e-81 305.8 216 71.3
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 6.1e-81 305.1 204 73.5
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.5e-79 299.7 243 61.7
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.3e-78 297.4 184 82.6
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.3e-78 297.4 305 54.1
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 4.5e-76 288.9 239 59.4
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.0e-75 287.7 196 78.1
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.5e-74 283.1 260 56.2
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.2e-74 282.7 243 59.7
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.7e-70 270.4 234 59.8
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.2e-68 264.2 247 57.5
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.5e-68 263.8 243 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 6.5e-67 258.5 243 54.3
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 1.1e-66 257.7 252 52.0
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 1.9e-66 256.9 201 64.2
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.9e-66 256.9 200 63.0
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.6e-63 246.5 147 86.4
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 1.7e-59 233.8 138 81.9
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.5e-59 231.9 207 63.3
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-55 221.1 194 61.9
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 2.8e-54 216.5 244 48.4
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 2.7e-52 209.9 234 46.6
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.2e-50 203.0 166 65.1
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 4.5e-44 182.6 122 76.2
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.7e-41 173.3 104 78.8
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 4.0e-40 169.5 105 80.0
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.6e-39 166.8 100 85.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 4.9e-38 162.5 148 63.5
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 3.0e-32 143.3 84 88.1
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.7e-30 137.5 238 37.4
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 3.5e-28 129.8 118 57.6
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 3.5e-28 129.8 118 57.6
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.6e-25 120.9 177 44.6
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 4.7e-25 119.4 82 73.2
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 7.5e-23 112.1 88 64.8
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.6e-20 104.4 155 41.3
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 4.3e-18 96.3 66 65.2
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 6.2e-17 92.4 85 58.8
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.0e-16 89.7 68 61.8
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 5.8e-15 85.9 99 46.5
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.9e-14 83.6 64 67.2
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.7e-09 66.2 61 50.8
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 8.9e-08 62.0 126 40.5
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 3.8e-06 56.6 35 82.9
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 8.4e-06 55.5 196 26.0


User provided reference genes

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