Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G060400 Theobroma cacao HOM05D015147 ORTHO05D003197 3.9e-193 677.9 335 100.0
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 2.2e-148 529.3 323 84.8
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 2.2e-108 396.4 350 62.9
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 5.2e-89 332.0 340 54.7
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 4.8e-26 122.9 328 32.6
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 5.0e-23 112.8 209 35.9
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.2e-18 97.4 326 28.2
CiPaw.06G122100 Carya illinoinensis HOM05D029580 ORTHO05D028671 9.1e-17 92.0 185 36.2
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 7.7e-16 89.0 226 31.9
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.8e-15 86.7 324 26.9
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 2.3e-12 77.4 92 41.3
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.9e-12 76.6 212 30.7
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 1.1e-11 75.1 112 36.6
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.2e-10 70.9 124 33.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 3.7e-10 70.1 87 39.1
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 3.7e-10 70.1 98 42.9
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.7e-10 70.1 97 38.1
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.8e-10 69.7 124 33.1
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 6.3e-10 69.3 113 35.4
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 8.2e-10 68.9 173 30.1
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 8.2e-10 68.9 323 24.8
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 2.4e-09 67.4 99 38.4
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 5.3e-09 66.2 199 30.2
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 5.3e-09 66.2 113 34.5
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 9.1e-09 65.5 87 40.2
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.2e-08 65.1 91 36.3
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.2e-08 65.1 105 35.2
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.5e-08 64.7 76 39.5
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.5e-08 64.7 118 34.7
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.5e-08 64.7 84 38.1
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.6e-08 63.9 130 36.9
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 2.6e-08 63.9 87 39.1
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.4e-08 63.5 63 52.4
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.5e-08 63.2 73 45.2
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 7.7e-08 62.4 196 27.6
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.3e-07 61.6 97 35.1
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 3.8e-07 60.1 95 32.6
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 5.0e-07 59.7 323 23.8
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 5.0e-07 59.7 73 39.7
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.0e-07 59.7 106 33.0
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 6.5e-07 59.3 98 37.8
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 6.5e-07 59.3 115 37.4
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 6.5e-07 59.3 207 30.4
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 1.1e-06 58.5 86 34.9
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.4e-06 58.2 102 35.3
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 3.2e-06 57.0 76 31.6
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 3.2e-06 57.0 152 30.9
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 4.2e-06 56.6 74 37.8
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 5.5e-06 56.2 111 34.2
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.5e-06 56.2 89 38.2
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 9.4e-06 55.5 97 36.1


User provided reference genes

Program Settings