Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 5.8e-239 830.5 419 100.0
Thecc.02G060400 Theobroma cacao HOM05D015147 ORTHO05D003197 6.2e-148 528.1 323 84.8
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 7.4e-117 424.9 426 60.1
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 1.3e-84 317.8 343 53.1
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 1.7e-36 157.9 430 32.3
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 8.9e-30 135.6 426 30.0
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 7.8e-26 122.5 307 34.5
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.1e-25 119.8 443 27.3
CiPaw.06G122100 Carya illinoinensis HOM05D029580 ORTHO05D028671 8.7e-25 119.0 387 29.7
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.6e-23 113.6 304 32.9
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.5e-21 108.2 430 27.7
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 1.3e-17 95.1 303 29.7
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 3.0e-17 94.0 431 25.3
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.1e-16 92.0 120 40.8
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 2.5e-16 90.9 431 27.1
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 5.6e-16 89.7 432 25.7
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.6e-16 89.7 475 25.9
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 7.3e-16 89.4 433 25.2
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.8e-15 87.4 423 25.5
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 6.2e-15 86.3 428 25.0
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.1e-14 85.5 436 25.5
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.8e-14 84.7 439 25.3
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.8e-14 84.7 430 25.6
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 2.4e-14 84.3 425 24.9
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 2.4e-14 84.3 430 24.9
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 9.0e-14 82.4 433 26.8
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 9.0e-14 82.4 425 26.6
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.2e-13 82.0 429 24.5
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 1.5e-13 81.6 429 24.5
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 2.0e-13 81.3 90 43.3
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 7.6e-13 79.3 97 40.2
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.3e-12 78.6 127 37.0
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 8.4e-12 75.9 124 35.5
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.1e-11 75.5 79 46.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.4e-11 74.3 437 24.5
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 2.4e-11 74.3 422 24.6
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.4e-11 74.3 103 39.8
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 3.2e-11 73.9 80 42.5
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 4.2e-11 73.6 427 23.7
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.1e-11 72.8 436 24.8
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 9.3e-11 72.4 427 25.3
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.2e-10 72.0 440 24.8
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.7e-10 70.9 433 24.2
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 3.5e-10 70.5 426 23.9
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.5e-10 70.5 103 38.8
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 3.5e-10 70.5 104 38.5
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 4.6e-10 70.1 76 46.1
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 6.0e-10 69.7 82 36.6
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 7.9e-10 69.3 427 23.7
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 7.9e-10 69.3 91 39.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.0e-09 68.9 310 29.7
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 1.0e-09 68.9 104 36.5
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.3e-09 68.6 103 38.8
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.3e-09 68.6 79 39.2
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-09 68.6 91 40.7
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 1.8e-09 68.2 78 42.3
Sabra09G0104600 Salix brachista HOM05D015147 ORTHO05D003197 2.3e-09 67.8 244 32.4
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 3.0e-09 67.4 115 38.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.0e-09 67.4 128 31.2
HanXRQChr13g0387151 Helianthus annuus HOM05D004095 ORTHO05D003197 3.0e-09 67.4 471 23.6
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.9e-09 67.0 307 29.3
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 5.1e-09 66.6 297 29.0
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 5.1e-09 66.6 102 36.3
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 5.1e-09 66.6 80 45.0
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 6.7e-09 66.2 255 29.4
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 8.7e-09 65.9 103 36.9
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.5e-08 65.1 460 22.2
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.9e-08 64.7 447 25.7
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 2.5e-08 64.3 77 36.4
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 3.3e-08 63.9 92 34.8
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 3.3e-08 63.9 85 35.3
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 3.3e-08 63.9 423 24.1
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 4.3e-08 63.5 91 34.1
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 9.6e-08 62.4 161 35.4
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 9.6e-08 62.4 425 24.2
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.6e-07 61.6 101 33.7
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.6e-07 61.6 89 38.2
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.6e-07 61.6 89 38.2
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 1.6e-07 61.6 428 22.9
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 2.1e-07 61.2 79 40.5
Os03g0241300 Oryza sativa ssp. japonica HOM05D029520 ORTHO05D030405 2.1e-07 61.2 80 36.2
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 2.8e-07 60.8 433 24.9
Zm00001eb398970 Zea mays HOM05D029520 ORTHO05D030405 3.7e-07 60.5 84 35.7
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.8e-07 60.1 98 39.8
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 4.8e-07 60.1 91 35.2
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 4.8e-07 60.1 180 34.4
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 1.1e-06 58.9 80 36.2
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 1.4e-06 58.5 88 36.4
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 1.8e-06 58.2 109 36.7
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 1.8e-06 58.2 108 37.0
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.4e-06 57.8 98 38.8
Psat5g002600 Pisum sativum HOM05D015147 ORTHO05D003197 4.0e-06 57.0 43 62.8
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 4.0e-06 57.0 123 30.9
MD02G1126500 Malus domestica HOM05D004095 ORTHO05D003197 5.3e-06 56.6 79 41.8
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 5.3e-06 56.6 431 23.7
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 6.9e-06 56.2 85 31.8
Psat6g003360 Pisum sativum HOM05D013708 ORTHO05D003197 6.9e-06 56.2 97 35.1
Prupe.8G165300 Prunus persica HOM05D029580 ORTHO05D028671 6.9e-06 56.2 219 30.1
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 6.9e-06 56.2 151 29.8


User provided reference genes

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