Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 1.5e-56 222.6 111 100.0
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 3.3e-32 141.7 109 76.1
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 4.0e-30 134.8 81 87.7
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 1.2e-29 133.3 81 82.7
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 1.9e-27 125.9 81 80.2
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 5.5e-27 124.4 81 79.0
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 7.1e-27 124.0 100 65.0
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 7.1e-27 124.0 81 79.0
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 1.8e-25 119.4 80 76.2
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 3.9e-25 118.2 80 73.8
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 7.4e-24 114.0 87 67.8
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 9.6e-24 113.6 113 51.3
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.3e-23 113.2 86 65.1
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 1.6e-23 112.8 80 72.5
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 2.1e-23 112.5 108 58.3
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 2.1e-23 112.5 86 68.6
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 6.2e-23 110.9 86 68.6
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 1.8e-22 109.4 82 64.6
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 1.8e-22 109.4 80 65.0
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 2.4e-22 109.0 108 56.5
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 2.4e-22 109.0 104 58.7
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 3.1e-22 108.6 86 61.6
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 5.3e-22 107.8 80 68.8
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 6.9e-22 107.5 87 64.4
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 6.9e-22 107.5 104 56.7
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 6.9e-22 107.5 92 60.9
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 4.5e-21 104.8 86 58.1
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 5.8e-21 104.4 76 71.1
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 2.2e-20 102.4 79 65.8
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 2.2e-20 102.4 81 65.4
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 2.9e-20 102.1 81 63.0
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 3.8e-20 101.7 82 62.2
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 3.8e-20 101.7 85 60.0
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 4.9e-20 101.3 80 67.5
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 4.9e-20 101.3 75 66.7
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 1.1e-19 100.1 78 64.1
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.1e-19 100.1 75 65.3
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 1.1e-19 100.1 80 61.2
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 1.4e-19 99.8 80 62.5
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 1.9e-19 99.4 88 60.2
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 2.5e-19 99.0 75 65.3
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 4.2e-19 98.2 75 64.0
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 7.1e-19 97.4 75 62.7
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.6e-18 96.3 75 62.7
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 2.7e-18 95.5 76 63.2
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 8.7e-17 90.5 81 58.0
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 1.9e-16 89.4 77 50.6
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.9e-16 89.4 81 59.3
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 2.5e-16 89.0 76 52.6
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 5.7e-16 87.8 80 56.2
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 7.4e-16 87.4 81 58.0
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 1.3e-15 86.7 76 55.3
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 8.2e-15 84.0 103 51.5
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 4.1e-14 81.6 80 58.8
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 6.9e-14 80.9 96 43.8
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 9.0e-14 80.5 80 45.0
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 9.0e-14 80.5 136 38.2
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 1.3e-12 76.6 92 44.6
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 1.3e-12 76.6 92 44.6
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 3.8e-12 75.1 77 46.8
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 6.5e-12 74.3 80 43.8
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 2.5e-11 72.4 74 47.3
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 6.7e-09 64.3 42 71.4
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 4.8e-07 58.2 86 38.4
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 1.1e-06 57.0 80 35.0
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 3.1e-06 55.5 38 73.7


User provided reference genes

Program Settings