Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G058700 Theobroma cacao HOM05D000003 ORTHO05D002259 1.4e-83 312.8 142 100.0
Thecc.04G054400 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-42 176.8 129 61.2
Thecc.05G076400 Theobroma cacao HOM05D000003 ORTHO05D002259 3.5e-26 122.1 132 41.7
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.3e-25 120.2 116 41.4
Thecc.05G093100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.5e-24 116.7 131 38.9
Thecc.09G263100 Theobroma cacao HOM05D000003 ORTHO05D002259 4.2e-24 115.2 132 40.2
Thecc.05G198700 Theobroma cacao HOM05D000003 ORTHO05D002259 7.2e-24 114.4 123 39.8
Thecc.06G083800 Theobroma cacao HOM05D000101 ORTHO05D000089 3.6e-23 112.1 108 47.2
Thecc.10G061600 Theobroma cacao HOM05D000003 ORTHO05D002259 5.2e-22 108.2 132 40.9
Thecc.08G107500 Theobroma cacao HOM05D000003 ORTHO05D002259 1.5e-21 106.7 126 38.9
Thecc.04G115600 Theobroma cacao HOM05D000003 ORTHO05D002259 4.8e-20 101.7 114 40.4
Thecc.04G004700 Theobroma cacao HOM05D000003 ORTHO05D002259 8.3e-20 100.9 51 90.2
Thecc.02G247200 Theobroma cacao HOM05D000003 ORTHO05D002259 3.1e-19 99.0 114 40.4
Thecc.01G196800 Theobroma cacao HOM05D000003 ORTHO05D002259 7.0e-19 97.8 125 36.0
Atru.chr4.1942 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-18 94.7 126 35.7
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 1.0e-17 94.0 138 32.6
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-17 93.6 136 31.6
Thecc.05G035100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-17 93.2 110 38.2
Thecc.K0005100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.7e-17 93.2 109 41.3
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 3.8e-17 92.0 126 37.3
Thecc.05G092100 Theobroma cacao HOM05D000003 ORTHO05D002259 1.1e-16 90.5 121 32.2
Thecc.04G117300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.5e-16 90.1 94 43.6
Atru.chr6.1197 Acer truncatum HOM05D000003 ORTHO05D002259 4.2e-16 88.6 144 31.9
Thecc.07G153900 Theobroma cacao HOM05D000003 ORTHO05D002259 4.2e-16 88.6 106 41.5
COL.COLO4_36005 Corchorus olitorius HOM05D000003 ORTHO05D002259 5.5e-16 88.2 122 35.2
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 7.2e-16 87.8 126 36.5
Atru.chr6.296 Acer truncatum HOM05D000003 ORTHO05D002259 7.2e-16 87.8 126 34.9
Atru.chr6.253 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-15 86.7 126 31.7
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-15 86.3 140 32.1
Atru.chr11.2510 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-15 85.5 131 32.8
COL.COLO4_23441 Corchorus olitorius HOM05D000003 ORTHO05D002259 6.1e-15 84.7 109 36.7
Atru.chr11.1841 Acer truncatum HOM05D000003 ORTHO05D002259 8.0e-15 84.3 133 30.8
Thecc.03G002300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.0e-14 84.0 94 42.6
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-14 83.2 126 34.9
Thecc.01G176600 Theobroma cacao HOM05D000003 ORTHO05D002259 1.8e-14 83.2 116 35.3
Atru.chr3.3914 Acer truncatum HOM05D000003 ORTHO05D002259 6.8e-14 81.3 128 33.6
Atru.chr7.96 Acer truncatum HOM05D000003 ORTHO05D002259 8.9e-14 80.9 126 32.5
Thecc.06G134300 Theobroma cacao HOM05D014430 ORTHO05D002259 1.2e-13 80.5 83 41.0
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 2.0e-13 79.7 146 29.5
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 2.0e-13 79.7 146 31.5
Hma1.2p1_0055F.1_g031300 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.0e-13 79.7 126 34.1
Atru.chr4.1523 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-13 79.0 126 33.3
Atru.chr7.607 Acer truncatum HOM05D000003 ORTHO05D002259 3.4e-13 79.0 121 31.4
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 4.4e-13 78.6 126 31.7
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-13 78.2 139 30.2
Atru.chr12.2402 Acer truncatum HOM05D000003 ORTHO05D002259 5.7e-13 78.2 139 31.7
Thecc.05G210800 Theobroma cacao HOM05D014430 ORTHO05D002259 5.7e-13 78.2 97 38.1
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-13 77.8 143 28.7
Gorai.010G220900 Gossypium raimondii HOM05D014430 ORTHO05D002259 9.8e-13 77.4 116 34.5
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-12 77.0 133 30.8
Gohir.D06G188501 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.3e-12 77.0 116 34.5
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-12 76.6 146 31.5
Hma1.2p1_0402F.1_g145030 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 2.2e-12 76.3 141 28.4
Atru.chr13.1833 Acer truncatum HOM05D000003 ORTHO05D002259 2.8e-12 75.9 113 36.3
Thecc.04G121700 Theobroma cacao HOM05D000003 ORTHO05D002259 2.8e-12 75.9 126 29.4
Thecc.04G000700 Theobroma cacao HOM05D000003 ORTHO05D002259 3.7e-12 75.5 103 35.9
Atru.chr4.1973 Acer truncatum HOM05D000003 ORTHO05D002259 8.3e-12 74.3 126 29.4
Atru.chr8.877 Acer truncatum HOM05D000003 ORTHO05D002259 8.3e-12 74.3 126 33.3
COL.COLO4_22852 Corchorus olitorius HOM05D000003 ORTHO05D002259 1.1e-11 73.9 106 31.1
Atru.chr1.1674 Acer truncatum HOM05D000003 ORTHO05D002259 3.1e-11 72.4 138 29.7
Atru.chr5.2369 Acer truncatum HOM05D000003 ORTHO05D002259 3.1e-11 72.4 126 27.8
Hma1.2p1_0719F.1_g208490 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 3.1e-11 72.4 105 37.1
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-11 72.0 126 31.0
Thecc.04G262700 Theobroma cacao HOM05D000003 ORTHO05D002259 5.4e-11 71.6 115 31.3
Thecc.07G137100 Theobroma cacao HOM05D000003 ORTHO05D002259 5.4e-11 71.6 82 42.7
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 5.4e-11 71.6 139 30.2
Atru.chr6.184 Acer truncatum HOM05D000003 ORTHO05D002259 7.0e-11 71.2 126 29.4
Atru.chr13.2301 Acer truncatum HOM05D000003 ORTHO05D002259 1.2e-10 70.5 136 29.4
Thecc.02G094300 Theobroma cacao HOM05D000003 ORTHO05D002259 1.2e-10 70.5 99 40.4
TWI14G0536 Tripterygium wilfordii HOM05D008457 ORTHO05D002259 1.2e-10 70.5 116 32.8
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.2e-10 70.5 118 31.4
Atru.chr1.3206 Acer truncatum HOM05D000003 ORTHO05D002259 2.7e-10 69.3 126 27.0
Atru.chr4.3157 Acer truncatum HOM05D000003 ORTHO05D002259 2.7e-10 69.3 126 27.8
Atru.chr7.381 Acer truncatum HOM05D000003 ORTHO05D002259 2.7e-10 69.3 141 29.8
Atru.chr8.1175 Acer truncatum HOM05D000003 ORTHO05D002259 2.7e-10 69.3 108 30.6
Rhsim11G0109000 Rhododendron simsii HOM05D000002 ORTHO05D000047 5.9e-10 68.2 64 42.2
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-10 67.8 126 28.6
Thecc.09G168800 Theobroma cacao HOM05D000003 ORTHO05D002259 7.8e-10 67.8 114 36.0
Thecc.04G086900 Theobroma cacao HOM05D000508 ORTHO05D000371 1.3e-09 67.0 79 39.2
Atru.chr5.2215 Acer truncatum HOM05D000003 ORTHO05D002259 2.9e-09 65.9 135 26.7
Atru.chr1.2519 Acer truncatum HOM05D000003 ORTHO05D002259 3.8e-09 65.5 98 34.7
Atru.chr8.1166 Acer truncatum HOM05D003047 ORTHO05D000627 5.0e-09 65.1 126 34.1
Manes.12G088876 Manihot esculenta HOM05D000003 ORTHO05D002259 5.0e-09 65.1 128 29.7
Atru.chr2.2918 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-09 64.7 126 28.6
Thecc.04G251800 Theobroma cacao HOM05D000003 ORTHO05D002259 6.6e-09 64.7 75 41.3
Thecc.08G170700 Theobroma cacao HOM05D000003 ORTHO05D002259 6.6e-09 64.7 54 42.6
Atru.chr6.413 Acer truncatum HOM05D000003 ORTHO05D002259 8.6e-09 64.3 126 27.0
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-08 63.9 142 30.3
Thecc.05G155300 Theobroma cacao HOM05D014430 ORTHO05D002259 1.9e-08 63.2 58 43.1
Thecc.10G164000 Theobroma cacao HOM05D000003 ORTHO05D002259 1.9e-08 63.2 119 29.4
Gohir.D07G031150 Gossypium hirsutum HOM05D014430 ORTHO05D002259 2.5e-08 62.8 110 30.9
Gohir.D13G210550 Gossypium hirsutum HOM05D008457 ORTHO05D011002 2.5e-08 62.8 125 30.4
Gorai.013G240100 Gossypium raimondii HOM05D008457 ORTHO05D011002 2.5e-08 62.8 125 30.4
Thecc.09G083400 Theobroma cacao HOM05D014430 ORTHO05D002259 2.5e-08 62.8 61 39.3
Atru.chr13.1770 Acer truncatum HOM05D000003 ORTHO05D002259 3.3e-08 62.4 105 31.4
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-08 62.0 146 28.1
Atru.chr2.2563 Acer truncatum HOM05D000003 ORTHO05D002259 9.5e-08 60.8 126 30.2
Gohir.A06G181801 Gossypium hirsutum HOM05D014430 ORTHO05D002259 1.2e-07 60.5 116 31.9
Gorai.001G032500 Gossypium raimondii HOM05D014430 ORTHO05D002259 1.2e-07 60.5 110 30.0
Rhsim12G0011400 Rhododendron simsii HOM05D012301 ORTHO05D013815 1.2e-07 60.5 60 46.7
Sc24g0002380 Simmondsia chinensis HOM05D003282 ORTHO05D003637 1.6e-07 60.1 90 28.9
Atru.chr6.103 Acer truncatum HOM05D000003 ORTHO05D002259 2.1e-07 59.7 126 27.0
CSS0031335 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 2.1e-07 59.7 76 34.2
Duzib264G0111 Durio zibethinus HOM05D000003 ORTHO05D002259 2.1e-07 59.7 110 30.9
Atru.chr6.35 Acer truncatum HOM05D000003 ORTHO05D002259 2.8e-07 59.3 94 35.1
COL.COLO4_33988 Corchorus olitorius HOM05D012135 ORTHO05D016957 2.8e-07 59.3 103 32.0
Thecc.02G298600 Theobroma cacao HOM05D029474 ORTHO05D002259 3.6e-07 58.9 126 28.6
Thecc.09G128200 Theobroma cacao HOM05D000003 ORTHO05D002259 3.6e-07 58.9 74 41.9
Hma1.2p1_3154F.1_g333360 Hydrangea macrophylla HOM05D000003 ORTHO05D002259 4.7e-07 58.5 81 42.0
Rhsim08G0187000 Rhododendron simsii HOM05D040390 ORTHO05D013815 4.7e-07 58.5 79 32.9
Thecc.06G078500 Theobroma cacao HOM05D029474 ORTHO05D036048 6.1e-07 58.2 124 28.2
Atru.chr4.578 Acer truncatum HOM05D000003 ORTHO05D000651 8.0e-07 57.8 114 30.7
Hma1.2p1_0897F.1_g234290 Hydrangea macrophylla HOM05D000155 ORTHO05D000022 8.0e-07 57.8 81 40.7
MBI14_g11704_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.0e-07 57.8 112 31.2
CSS0001091 Camellia sinensis var. sinensis HOM05D039892 ORTHO05D013815 1.0e-06 57.4 70 35.7
QL02p092030 Quercus lobata HOM05D000003 ORTHO05D000022 1.0e-06 57.4 115 29.6
MBI04_g08948_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-06 57.0 127 29.1
Sc08g0005900 Simmondsia chinensis HOM05D039915 ORTHO05D002259 1.4e-06 57.0 83 31.3
TWI34G1270 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 1.4e-06 57.0 108 31.5
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 1.8e-06 56.6 114 30.7
Atru.chr2.1999 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-06 56.2 101 32.7
Atru.chr5.2972 Acer truncatum HOM05D000003 ORTHO05D002259 2.3e-06 56.2 108 27.8
CSS0006262 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-06 56.2 75 32.0
Gohir.D11G308275 Gossypium hirsutum HOM05D029881 ORTHO05D020809 2.3e-06 56.2 108 28.7
Thecc.05G094900 Theobroma cacao HOM05D000003 ORTHO05D002259 2.3e-06 56.2 90 34.4
Thecc.05G083000 Theobroma cacao HOM05D000003 ORTHO05D002259 3.0e-06 55.8 114 28.9
Thecc.09G211800 Theobroma cacao HOM05D009258 ORTHO05D009583 3.0e-06 55.8 88 33.0
Atru.chr2.1988 Acer truncatum HOM05D000003 ORTHO05D002259 4.0e-06 55.5 83 33.7
Atru.chr2.923 Acer truncatum HOM05D000021 ORTHO05D000010 4.0e-06 55.5 98 34.7
CSS0005869 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 4.0e-06 55.5 76 34.2
CSS0014107 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.0e-06 55.5 83 31.3
Gohir.A08G216533 Gossypium hirsutum HOM05D008457 ORTHO05D011002 4.0e-06 55.5 133 27.8
Lj2g0005412 Lotus japonicus HOM05D000003 ORTHO05D013815 4.0e-06 55.5 99 29.3
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-06 55.1 114 29.8
CiPaw.03G110900 Carya illinoinensis HOM05D000155 ORTHO05D000022 5.2e-06 55.1 115 30.4
Gohir.A09G072500 Gossypium hirsutum HOM05D008457 ORTHO05D011002 5.2e-06 55.1 114 30.7
Atru.chr10.984 Acer truncatum HOM05D000502 ORTHO05D002259 6.8e-06 54.7 126 27.0
Thecc.04G251000 Theobroma cacao HOM05D039657 ORTHO05D020809 6.8e-06 54.7 104 29.8
Gohir.D05G282050 Gossypium hirsutum HOM05D008457 ORTHO05D011002 8.9e-06 54.3 126 28.6


User provided reference genes

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