Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 2.5e-75 285.4 148 100.0
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.0e-57 226.9 148 81.8
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 6.7e-57 224.2 148 79.7
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.1e-54 216.9 149 77.2
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.1e-54 216.9 149 77.2
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.1e-54 214.9 149 77.2
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.0e-49 198.4 144 75.0
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.2e-48 196.8 144 75.0
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.5e-48 196.4 148 69.6
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 1.5e-48 196.4 149 72.5
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.4e-48 194.9 144 74.3
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 3.7e-47 191.8 151 71.5
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.4e-46 189.1 147 71.4
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 3.1e-46 188.7 154 68.8
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 9.1e-46 187.2 145 71.0
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 2.7e-45 185.7 158 65.2
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.7e-45 185.7 145 70.3
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.0e-44 183.7 147 67.3
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 1.7e-44 183.0 153 68.6
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 1.7e-44 183.0 149 67.8
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 3.8e-44 181.8 148 68.2
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 3.8e-44 181.8 144 70.8
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 6.5e-44 181.0 146 71.2
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 2.5e-43 179.1 152 67.1
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 2.5e-43 179.1 143 71.3
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 3.3e-43 178.7 144 72.9
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 4.2e-43 178.3 142 68.3
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 5.5e-43 177.9 161 64.0
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 7.2e-43 177.6 148 68.2
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 1.2e-42 176.8 138 70.3
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 2.1e-42 176.0 142 69.0
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 2.1e-42 176.0 145 69.7
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 2.8e-42 175.6 153 67.3
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 2.8e-42 175.6 149 65.1
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 6.1e-42 174.5 141 68.8
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 1.0e-41 173.7 152 67.8
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.4e-41 173.3 141 68.1
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.4e-41 173.3 145 64.8
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.4e-41 173.3 145 64.8
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.4e-41 173.3 152 66.4
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 2.3e-41 172.6 157 63.1
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 2.3e-41 172.6 145 66.2
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 5.2e-41 171.4 142 66.9
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.5e-40 169.9 139 64.7
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 2.8e-39 165.6 145 64.1
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 2.8e-39 165.6 146 65.1
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 6.3e-39 164.5 139 63.3
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 8.3e-39 164.1 145 63.4
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 1.1e-38 163.7 142 69.0
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 1.4e-38 163.3 141 65.2
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.4e-38 163.3 144 61.8
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 3.1e-38 162.2 139 62.6
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 5.4e-38 161.4 138 63.8
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 9.2e-38 160.6 142 64.1
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.2e-37 160.2 144 63.2
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 1.6e-37 159.8 141 63.1
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.6e-37 159.8 141 63.1
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.6e-37 159.8 141 64.5
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 4.5e-37 158.3 145 63.4
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 5.9e-37 157.9 142 62.0
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 7.8e-37 157.5 139 64.7
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 7.8e-37 157.5 142 63.4
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 1.0e-36 157.1 151 60.9
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.0e-36 157.1 147 58.5
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 1.7e-36 156.4 145 60.7
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.7e-36 156.4 145 58.6
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 2.3e-36 156.0 147 59.9
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 2.3e-36 156.0 145 58.6
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 2.9e-36 155.6 145 60.7
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 2.9e-36 155.6 145 57.9
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 5.0e-36 154.8 142 57.7
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 8.6e-36 154.1 153 60.8
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 8.6e-36 154.1 145 60.0
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 1.9e-35 152.9 137 64.2
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 2.5e-35 152.5 139 60.4
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 4.3e-35 151.8 150 58.7
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 5.6e-35 151.4 142 59.9
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 5.6e-35 151.4 144 61.1
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 9.5e-35 150.6 157 57.3
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 1.2e-34 150.2 142 60.6
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 1.6e-34 149.8 141 60.3
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 1.6e-34 149.8 145 55.9
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 1.6e-34 149.8 142 60.6
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 2.1e-34 149.4 150 56.0
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 2.8e-34 149.1 145 57.9
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 2.8e-34 149.1 149 56.4
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.8e-34 149.1 141 60.3
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.3e-33 146.0 134 61.2
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 4.0e-33 145.2 135 63.7
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 6.8e-33 144.4 142 61.3
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.0e-32 142.9 131 61.1
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 3.4e-32 142.1 132 64.4
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 7.5e-32 141.0 152 53.9
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 9.8e-32 140.6 141 56.0
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 9.8e-32 140.6 137 57.7
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 1.3e-31 140.2 137 56.9
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 2.2e-31 139.4 133 62.4
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 3.7e-31 138.7 131 58.8
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 3.7e-31 138.7 143 56.6
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 1.1e-30 137.1 139 54.7
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 2.4e-30 136.0 141 53.9
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 3.2e-30 135.6 136 55.9
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 3.2e-30 135.6 136 55.9
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 3.2e-30 135.6 136 55.9
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 3.2e-30 135.6 136 55.9
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 1.6e-29 133.3 138 53.6
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 2.0e-29 132.9 141 53.9
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 4.6e-29 131.7 136 56.6
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 4.6e-29 131.7 151 54.3
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 2.3e-28 129.4 145 53.8
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 6.2e-26 121.3 150 50.7
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 8.9e-25 117.5 118 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 1.2e-24 117.1 138 52.2
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 1.2e-24 117.1 139 48.9
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 5.8e-24 114.8 131 53.4
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 1.3e-23 113.6 134 53.7
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.7e-23 113.2 137 47.4
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.7e-23 113.2 113 54.9
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 2.8e-18 95.9 141 46.8
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 2.8e-18 95.9 116 50.0
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 4.7e-18 95.1 144 45.1
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 1.8e-17 93.2 138 42.8
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 1.5e-16 90.1 73 60.3
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 3.4e-16 89.0 64 70.3
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 7.5e-16 87.8 64 70.3
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 8.1e-10 67.8 137 34.3
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 1.1e-09 67.4 104 43.3
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 2.0e-08 63.2 44 72.7
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 9.9e-08 60.8 69 44.9
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.2e-07 59.7 55 52.7
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 6.4e-07 58.2 125 35.2
Zm00001eb181930 Zea mays HOM05D001107 ORTHO05D007353 3.2e-06 55.8 44 70.5


User provided reference genes

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