Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 8.8e-78 293.5 144 100.0
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.2e-76 288.9 144 97.9
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.4e-75 286.2 144 96.5
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 2.4e-75 285.4 144 95.8
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 96.5
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 95.8
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 95.8
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.8
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 9.1e-75 283.5 141 97.2
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 9.1e-75 283.5 141 97.2
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 9.1e-75 283.5 141 97.2
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 95.1
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 94.4
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 94.4
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 95.1
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 94.4
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 94.4
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.1
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 95.1
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 95.1
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 95.8
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 3.5e-74 281.6 143 95.8
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 93.8
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 95.1
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 94.4
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 94.4
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 94.4
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 93.8
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 93.8
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 1.3e-73 279.6 141 93.6
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.1
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.1
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 93.8
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 94.4
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 92.4
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 92.4
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 141 95.7
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 2.2e-73 278.9 141 95.7
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.8
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.1
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 93.8
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 93.1
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 91.7
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 5.0e-73 277.7 143 93.7
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 93.1
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.1
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 6.5e-73 277.3 141 94.3
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.1
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.7
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 93.1
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 1.9e-72 275.8 141 93.6
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 1.9e-72 275.8 141 93.6
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 1.9e-72 275.8 141 93.6
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 91.7
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 1.9e-72 275.8 141 93.6
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.9e-72 275.8 141 95.0
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 92.4
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 91.7
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 7.2e-72 273.9 141 93.6
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 91.7
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 7.2e-72 273.9 141 92.9
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 91.7
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.7e-71 271.9 141 92.2
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 89.6
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 90.3
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 89.6
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 3.0e-70 268.5 144 88.9
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 5.2e-70 267.7 138 90.6
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 8.8e-70 266.9 154 87.7
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 4.4e-69 264.6 170 78.2
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 4.4e-69 264.6 141 90.1
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 7.5e-69 263.8 167 79.0
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 9.8e-69 263.5 141 89.4
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.7e-68 261.5 140 90.7
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 3.7e-68 261.5 138 88.4
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 6.3e-68 260.8 141 87.9
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 8.3e-68 260.4 140 87.9
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 1.1e-67 260.0 140 88.6
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-67 260.0 140 87.9
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-67 260.0 140 87.9
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.1e-67 260.0 138 87.0
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.4e-67 259.6 141 87.9
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 2.4e-67 258.8 140 87.9
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 3.1e-67 258.5 140 87.9
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 4.1e-67 258.1 138 87.0
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 4.1e-67 258.1 140 88.6
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 7.0e-67 257.3 140 87.9
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 9.1e-67 256.9 130 93.8
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.6e-66 256.1 137 88.3
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 85.0
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.7e-65 252.7 138 85.5
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 2.9e-65 251.9 138 84.8
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 84.3
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 3.8e-65 251.5 208 65.9
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.5e-64 248.8 140 83.6
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.5e-64 248.8 140 83.6
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 3.3e-64 248.4 202 65.8
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 3.3e-64 248.4 140 85.7
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 3.3e-64 248.4 140 85.7
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 3.3e-64 248.4 140 85.7
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 3.3e-64 248.4 140 85.7
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.3e-64 248.4 140 85.0
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 9.5e-64 246.9 140 82.1
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 9.5e-64 246.9 140 82.1
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.6e-63 246.1 156 78.8
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.1e-63 245.7 168 73.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 8.0e-63 243.8 142 80.3
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.0e-62 243.4 137 85.4
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 8.3e-60 233.8 141 81.6
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-58 229.9 140 80.0
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 5.9e-58 227.6 127 83.5
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 5.9e-58 227.6 144 71.5
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.3e-54 215.7 138 71.0
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.3e-52 209.9 122 82.0
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 4.9e-52 208.0 114 86.0
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 3.2e-51 205.3 138 65.2
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.2e-50 203.4 139 65.5
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.6e-50 203.0 160 65.6
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.6e-49 197.6 120 81.7
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 2.1e-47 192.6 99 92.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 1.8e-46 189.5 97 90.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.3e-44 183.3 117 79.5
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 3.3e-32 142.1 74 94.6
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.0e-29 132.9 74 87.8
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 9.9e-29 130.6 74 85.1
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.7e-28 129.8 74 85.1
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 4.9e-28 128.3 139 47.5
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 2.4e-27 125.9 140 51.4
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 5.6e-16 88.2 43 90.7
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 2.2e-12 76.3 157 31.8
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.9e-12 75.9 117 38.5
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 6.4e-12 74.7 161 32.3
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 6.4e-12 74.7 53 66.0
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 5.4e-11 71.6 44 77.3
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.6e-07 60.1 36 69.4
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.8e-07 59.3 133 30.1
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 3.1e-06 55.8 83 38.6


User provided reference genes

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