Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 4.8e-88 327.8 164 100.0
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 1.3e-69 266.5 165 80.6
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 3.0e-66 255.4 166 79.5
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 4.7e-43 178.3 150 62.0
Gohir.A03G206000 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.3e-42 176.0 178 53.4
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 4.0e-42 175.3 178 53.4
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.2e-41 173.7 178 53.4
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.6e-41 172.6 179 56.4
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 2.6e-41 172.6 179 56.4
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 4.4e-41 171.8 139 65.5
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 9.8e-41 170.6 147 63.3
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 1.3e-40 170.2 127 68.5
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 2.2e-40 169.5 150 64.0
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.9e-40 169.1 162 57.4
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.9e-40 168.3 129 63.6
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.9e-40 168.3 129 62.8
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.8e-39 166.4 145 62.1
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 3.2e-39 165.6 154 62.3
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 1.6e-38 163.3 115 69.6
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 1.3e-37 160.2 116 69.0
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.1e-36 157.1 144 59.7
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 2.5e-36 156.0 118 64.4
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 3.3e-36 155.6 134 60.4
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 7.3e-36 154.5 141 58.2
QL11p052437 Quercus lobata HOM05D007970 ORTHO05D009943 5.2e-34 148.3 182 49.5
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 8.9e-34 147.5 158 53.2
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.5e-33 146.7 140 57.1
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.5e-33 146.7 140 57.1
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 1.1e-31 140.6 128 63.3
Gohir.A01G170700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 3.1e-26 122.5 159 51.6
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 4.0e-26 122.1 136 51.5
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 1.5e-25 120.2 181 42.0
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 1.7e-24 116.7 153 45.8
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.2e-24 116.3 157 43.9
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 2.9e-24 115.9 136 50.7
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 4.6e-22 108.6 124 50.8
CANSAT25G3784 Cannabis sativa HOM05D007970 ORTHO05D009943 1.2e-19 100.5 90 56.7
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 2.1e-19 99.8 100 52.0
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 1.1e-18 97.4 115 49.6
Rhsim05G0052900 Rhododendron simsii HOM05D007970 ORTHO05D009943 1.1e-18 97.4 132 43.2
Actinidia21480 Actinidia chinensis HOM05D007970 ORTHO05D009943 2.4e-18 96.3 142 42.3
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 3.1e-18 95.9 97 51.5
vmacro17329 Vaccinium macrocarpon HOM05D007970 ORTHO05D009943 8.9e-18 94.4 104 49.0
Actinidia14361 Actinidia chinensis HOM05D007970 ORTHO05D009943 5.8e-17 91.7 118 44.9
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 7.6e-17 91.3 78 56.4
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 7.6e-17 91.3 106 50.9
Nitab4.5_0013642g0020 Nicotiana tabacum HOM05D007970 ORTHO05D009943 1.7e-16 90.1 89 52.8
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 2.2e-16 89.7 108 50.0
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 2.9e-16 89.4 107 43.9
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 2.4e-15 86.3 93 51.6
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 2.4e-15 86.3 99 48.5
PGSC0003DMG400018628 Solanum tuberosum HOM05D007970 ORTHO05D009943 7.1e-15 84.7 94 45.7
MELO3C034691.2 Cucumis melo HOM05D007970 ORTHO05D009943 4.6e-14 82.0 120 49.2
Solyc01g111820.2 Solanum lycopersicum HOM05D007970 ORTHO05D009943 6.0e-14 81.6 94 46.8
Peaxi162Scf00362g00411 Petunia axillaris HOM05D007970 ORTHO05D009943 7.8e-14 81.3 98 45.9
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 1.3e-13 80.5 80 48.8
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 3.0e-13 79.3 87 49.4
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 5.1e-13 78.6 86 48.8
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 6.6e-13 78.2 77 57.1
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.5e-12 76.3 80 52.5
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 4.3e-12 75.5 108 47.2
Peaxi162Scf00078g00137 Petunia axillaris HOM05D007970 ORTHO05D009943 4.3e-12 75.5 76 51.3
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.6e-12 75.1 101 49.5
Sopen01g053860 Solanum pennellii HOM05D007970 ORTHO05D009943 7.3e-12 74.7 80 47.5
Migut.B00057 Erythranthe guttata HOM05D007970 ORTHO05D009943 4.7e-11 72.0 99 41.4
SGA_v2.0_scaffold32G13308 Striga asiatica HOM05D007970 ORTHO05D009943 6.2e-11 71.6 103 39.8
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 6.2e-11 71.6 107 43.0
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 8.1e-11 71.2 116 44.0
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.4e-10 70.5 89 49.4
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 1.8e-10 70.1 73 52.1
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 1.8e-10 70.1 88 48.9
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 2.4e-10 69.7 82 47.6
SGA_v2.0_scaffold195G40813 Striga asiatica HOM05D007970 ORTHO05D009943 2.4e-10 69.7 88 45.5
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.1e-10 69.3 101 47.5
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 4.0e-10 68.9 79 49.4
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 6.9e-10 68.2 101 47.5
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 6.9e-10 68.2 82 46.3
Lj9P400T40 Lonicera japonica HOM05D007970 ORTHO05D009943 9.0e-10 67.8 146 34.2
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 9.0e-10 67.8 121 38.8
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 9.0e-10 67.8 75 54.7
Sed0004456 Sechium edule HOM05D007970 ORTHO05D009943 1.2e-09 67.4 125 44.8
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.2e-09 67.4 80 47.5
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.2e-09 67.4 80 47.5
Nitab4.5_0000079g0240 Nicotiana tabacum HOM05D007970 ORTHO05D009943 1.5e-09 67.0 58 55.2
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 2.6e-09 66.2 107 40.2
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.6e-09 66.2 80 47.5
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 3.4e-09 65.9 94 48.9
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 3.4e-09 65.9 138 35.5
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 3.4e-09 65.9 98 41.8
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 4.4e-09 65.5 75 50.7
Migut.N01333 Erythranthe guttata HOM05D007970 ORTHO05D009943 5.8e-09 65.1 81 48.1
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 7.6e-09 64.7 88 46.6
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 7.6e-09 64.7 106 40.6
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 9.9e-09 64.3 107 39.3
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.9e-08 62.8 95 45.3
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 2.9e-08 62.8 77 41.6
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 3.8e-08 62.4 92 45.7
Medtr1g112960 Medicago truncatula HOM05D007970 ORTHO05D009943 3.8e-08 62.4 84 44.0
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 4.9e-08 62.0 77 53.2
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 4.9e-08 62.0 76 52.6
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 8.4e-08 61.2 70 51.4
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.1e-07 60.8 93 40.9
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 1.1e-07 60.8 66 56.1
Sp4g00090 Schrenkiella parvula HOM05D007970 ORTHO05D009943 1.1e-07 60.8 52 57.7
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 1.4e-07 60.5 69 53.6
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.4e-07 60.5 85 45.9
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.4e-07 60.5 95 42.1
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 1.9e-07 60.1 92 46.7
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.9e-07 60.1 102 43.1
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.9e-07 60.1 77 49.4
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.4e-07 59.7 98 40.8
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 3.2e-07 59.3 75 46.7
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 3.2e-07 59.3 53 62.3
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.2e-07 59.3 79 41.8
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 4.2e-07 58.9 112 40.2
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.2e-07 58.9 112 40.2
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.2e-07 58.9 112 40.2
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 4.2e-07 58.9 114 41.2
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 4.2e-07 58.9 82 50.0
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 5.4e-07 58.5 66 51.5
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 5.4e-07 58.5 94 44.7
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 5.4e-07 58.5 66 53.0
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 5.4e-07 58.5 58 51.7
SEGI_37168 Sequoiadendron giganteum HOM05D007970 ORTHO05D009943 5.4e-07 58.5 51 54.9
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 7.1e-07 58.2 83 44.6
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 7.1e-07 58.2 118 38.1
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 9.3e-07 57.8 86 40.7
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 1.2e-06 57.4 92 44.6
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.2e-06 57.4 67 50.7
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.2e-06 57.4 71 47.9
Sc08g0002710 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.6e-06 57.0 102 38.2
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 2.1e-06 56.6 82 54.9
Sed0017981 Sechium edule HOM05D007970 ORTHO05D009943 2.1e-06 56.6 65 58.5
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 2.7e-06 56.2 96 40.6
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 2.7e-06 56.2 66 50.0
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 3.5e-06 55.8 92 44.6
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 3.5e-06 55.8 83 44.6
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 3.5e-06 55.8 94 43.6
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 3.5e-06 55.8 85 45.9
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 3.5e-06 55.8 81 40.7
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 4.6e-06 55.5 66 50.0
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 6.0e-06 55.1 144 37.5
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 6.0e-06 55.1 92 44.6
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 6.0e-06 55.1 76 48.7
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 6.0e-06 55.1 66 51.5
SGA_v2.0_scaffold58G20343 Striga asiatica HOM05D007970 ORTHO05D009943 6.0e-06 55.1 101 42.6


User provided reference genes

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