Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 4.1e-202 709.1 873 100.0
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 2.1e-158 563.9 873 84.4
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 2.9e-155 553.5 868 86.5
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.4e-149 534.6 868 91.0
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 9.9e-148 528.5 868 90.7
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.7e-147 527.7 868 90.6
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 2.2e-102 377.9 873 75.9
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 4.1e-101 373.6 865 77.8
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 9.0e-101 372.5 870 79.3
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.1e-95 355.5 872 76.4
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 1.5e-95 355.1 871 73.4
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 2.6e-92 344.4 872 75.9
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 5.0e-91 340.1 870 72.6
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.2e-89 335.5 864 68.6
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.1e-89 334.7 871 74.5
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 1.5e-87 328.6 868 75.5
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 5.7e-87 326.6 877 64.0
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 1.3e-86 325.5 869 74.6
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.7e-86 325.1 872 74.9
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 4.8e-86 323.6 870 74.4
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 3.1e-85 320.9 875 73.8
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 7.0e-85 319.7 868 72.4
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.0e-83 315.8 868 74.5
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.7e-83 315.1 874 68.4
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 8.5e-83 312.8 876 69.7
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 3.0e-80 304.3 875 66.5
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.1e-79 302.4 868 73.0
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.2e-78 298.1 870 73.3
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 2.8e-78 297.7 866 73.7
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 1.8e-77 295.0 875 68.6
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.8e-77 295.0 873 72.4
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 3.1e-77 294.3 871 72.8
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 2.7e-76 291.2 871 72.0
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 5.9e-76 290.0 874 70.5
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 2.2e-75 288.1 871 71.3
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 3.8e-75 287.3 871 73.7
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.5e-74 285.4 871 75.9
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.9e-74 285.0 870 72.1
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 5.5e-74 283.5 871 71.0
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 7.2e-74 283.1 869 72.8
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.7e-73 281.2 869 72.8
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.7e-73 281.2 871 71.6
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 3.6e-73 280.8 874 69.5
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.8e-72 278.5 869 72.7
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.8e-72 278.5 870 75.7
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.8e-72 278.5 871 71.0
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 3.0e-72 277.7 869 71.1
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 3.0e-72 277.7 867 76.9
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 1.7e-70 271.9 876 66.4
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 6.3e-70 270.0 869 64.9
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 8.3e-70 269.6 863 71.3
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.4e-69 268.9 861 69.3
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 2.7e-68 264.6 857 72.9
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.3e-67 262.3 878 68.9
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 2.9e-67 261.2 744 81.0
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.9e-66 258.5 879 59.3
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 3.2e-66 257.7 869 68.7
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 8.0e-65 253.1 877 66.9
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.8e-64 251.9 855 68.0
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.0e-64 251.1 877 62.8
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 6.8e-64 250.0 884 68.3
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 7.5e-63 246.5 830 73.3
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 9.8e-63 246.1 865 70.1
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 3.7e-62 244.2 871 70.1
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 4.1e-61 240.7 874 61.3
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 2.0e-60 238.4 883 60.0
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 3.5e-60 237.7 873 70.0
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.8e-59 234.2 830 72.9
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.7e-57 227.3 869 62.6
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.7e-57 227.3 869 62.6
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 6.1e-57 226.9 804 73.4
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 8.9e-56 223.0 863 70.3
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 2.6e-55 221.5 880 69.3
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 4.4e-55 220.7 877 71.8
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.2e-52 212.6 867 62.1
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 2.5e-50 204.9 366 67.2
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.2e-49 202.6 867 69.1
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.6e-49 202.2 847 57.7
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.1e-49 201.8 367 66.8
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 3.6e-49 201.1 366 66.9
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 4.7e-49 200.7 879 68.3
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 4.7e-49 200.7 818 69.8
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.8e-48 198.7 890 57.4
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 4.0e-48 197.6 202 54.0
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 6.4e-46 190.3 445 53.3
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 6.4e-46 190.3 742 72.6
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 1.9e-45 188.7 857 68.8
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.0e-43 183.0 362 66.0
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 2.5e-42 178.3 877 61.2
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.1e-40 172.9 768 50.7
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 5.2e-40 170.6 736 75.7
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.3e-35 156.0 170 46.5
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 2.5e-34 151.8 850 65.3
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 4.3e-34 151.0 374 60.4
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 6.2e-33 147.1 175 48.6
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 5.2e-32 144.1 393 68.7
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 5.2e-32 144.1 174 46.6
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 5.8e-31 140.6 381 66.9
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 3.6e-25 121.3 370 57.6
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 4.4e-23 114.4 69 75.4
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 4.4e-23 114.4 384 56.5
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 9.3e-21 106.7 103 49.5
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 1.8e-16 92.4 197 35.5
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 6.9e-16 90.5 187 31.6
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 7.1e-13 80.5 65 61.5
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 3.3e-10 71.6 82 46.3
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 2.9e-06 58.5 169 27.8
SMO361G0319 Selaginella moellendorffii HOM05D005362 ORTHO05D010796 3.8e-06 58.2 101 29.7
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 4.9e-06 57.8 164 27.4
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 4.9e-06 57.8 69 46.4
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 6.4e-06 57.4 171 26.9
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 8.4e-06 57.0 114 28.9
Gorai.010G128600 Gossypium raimondii HOM05D024651 ORTHO05D019476 8.4e-06 57.0 31 80.6
Lalb_Chr10g0091291 Lupinus albus HOM05D008684 ORTHO05D010796 8.4e-06 57.0 94 34.0


User provided reference genes

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