Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G043000 Theobroma cacao HOM05D053669 ORTHO05D407128 1.1e-66 256.5 131 100.0
Duzib132G0512 Durio zibethinus HOM05D000028 ORTHO05D001343 2.4e-13 79.3 65 63.1
Duzib052G0500 Durio zibethinus HOM05D000028 ORTHO05D001343 6.9e-13 77.8 65 63.1
Thecc.02G042800 Theobroma cacao HOM05D000028 ORTHO05D001343 6.5e-11 71.2 67 55.2
Duzib052G0104 Durio zibethinus HOM05D000028 ORTHO05D001343 1.4e-10 70.1 67 55.2
Gorai.012G159700 Gossypium raimondii HOM05D000028 ORTHO05D001343 2.5e-10 69.3 65 56.9
Thecc.02G043100 Theobroma cacao HOM05D053669 ORTHO05D409966 1.6e-09 66.6 51 70.6
Ciclev10003776m.g Citrus clementina HOM05D000028 ORTHO05D011789 2.1e-09 66.2 65 52.3
Gohir.D01G166700 Gossypium hirsutum HOM05D000028 ORTHO05D001343 2.1e-09 66.2 67 50.7
Gorai.002G207200 Gossypium raimondii HOM05D000028 ORTHO05D001343 2.1e-09 66.2 67 50.7
Ciclev10003525m.g Citrus clementina HOM05D000028 ORTHO05D001343 2.7e-09 65.9 64 53.1
Gohir.A01G175800 Gossypium hirsutum HOM05D000028 ORTHO05D001343 3.5e-09 65.5 67 50.7
Duzib132G0996 Durio zibethinus HOM05D000028 ORTHO05D001343 4.6e-09 65.1 67 52.2
PGR042G0867 Punica granatum HOM05D000028 ORTHO05D001343 7.9e-09 64.3 65 53.8
Thecc.02G042700 Theobroma cacao HOM05D000028 ORTHO05D001343 7.9e-09 64.3 67 49.3
Atru.chr6.968 Acer truncatum HOM05D000028 ORTHO05D001343 1.0e-08 63.9 72 50.0
Ciclev10003133m.g Citrus clementina HOM05D000028 ORTHO05D001343 1.0e-08 63.9 69 50.7
PGR042G2446 Punica granatum HOM05D000028 ORTHO05D001343 1.0e-08 63.9 65 52.3
Lj6g0027319 Lotus japonicus HOM05D000028 ORTHO05D001343 1.3e-08 63.5 72 50.0
Atru.chr6.965 Acer truncatum HOM05D000028 ORTHO05D001343 2.3e-08 62.8 65 53.8
Dinv24248 Davidia involucrata HOM05D000028 ORTHO05D001343 2.3e-08 62.8 65 52.3
Glyma.15G049900 Glycine max HOM05D000028 ORTHO05D001343 2.3e-08 62.8 72 50.0
Ciclev10003704m.g Citrus clementina HOM05D000028 ORTHO05D001343 3.0e-08 62.4 64 53.1
DCAR_029226 Daucus carota HOM05D000028 ORTHO05D001343 3.9e-08 62.0 72 45.8
Lj9A316T44 Lonicera japonica HOM05D000028 ORTHO05D001343 3.9e-08 62.0 72 47.2
Lj6g0004684 Lotus japonicus HOM05D000028 ORTHO05D001343 3.9e-08 62.0 72 50.0
Atru.chr6.972 Acer truncatum HOM05D000028 ORTHO05D001343 5.1e-08 61.6 72 48.6
Cpa.g.sc2.42 Carica papaya HOM05D000028 ORTHO05D001343 5.1e-08 61.6 66 53.0
Lsat_1_v5_gn_9_116601 Lactuca sativa HOM05D000028 ORTHO05D001343 5.1e-08 61.6 70 51.4
Lalb_Chr20g0123261 Lupinus albus HOM05D000028 ORTHO05D011789 5.1e-08 61.6 72 48.6
Dinv19336 Davidia involucrata HOM05D000028 ORTHO05D001343 6.7e-08 61.2 72 47.2
Phvul.006G210000 Phaseolus vulgaris HOM05D000028 ORTHO05D001343 6.7e-08 61.2 70 50.0
THA.LOC104808075 Tarenaya hassleriana HOM05D000028 ORTHO05D001343 8.7e-08 60.8 71 46.5
ECA240G0912 Erigeron canadensis HOM05D000028 ORTHO05D001343 1.1e-07 60.5 72 48.6
Glyma.08G182500 Glycine max HOM05D000028 ORTHO05D001343 1.9e-07 59.7 72 47.2
CSS0015677 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D001343 2.5e-07 59.3 65 46.2
DCAR_001812 Daucus carota HOM05D000028 ORTHO05D001343 3.3e-07 58.9 72 45.8
RcHm_v2.0_Chr7g0224801 Rosa chinensis HOM05D000028 ORTHO05D001343 3.3e-07 58.9 60 51.7
Gohir.D02G231800 Gossypium hirsutum HOM05D000028 ORTHO05D001343 4.3e-07 58.5 67 44.8
Lalb_Chr20g0123281 Lupinus albus HOM05D000028 ORTHO05D001343 4.3e-07 58.5 65 50.8
Potri.001G108600 Populus trichocarpa HOM05D000028 ORTHO05D001343 4.3e-07 58.5 65 50.8
CiPaw.07G026500 Carya illinoinensis HOM05D000028 ORTHO05D001343 5.7e-07 58.2 70 44.3
Eucgr.I02704 Eucalyptus grandis HOM05D000028 ORTHO05D001343 5.7e-07 58.2 65 49.2
Gohir.A03G210200 Gossypium hirsutum HOM05D000028 ORTHO05D001343 5.7e-07 58.2 67 46.3
MD08G1224300 Malus domestica HOM05D000028 ORTHO05D001343 5.7e-07 58.2 64 46.9
Gohir.D12G039600 Gossypium hirsutum HOM05D000028 ORTHO05D001343 7.4e-07 57.8 62 48.4
Gorai.005G259500 Gossypium raimondii HOM05D000028 ORTHO05D001343 7.4e-07 57.8 67 43.3
Gorai.008G041300 Gossypium raimondii HOM05D000028 ORTHO05D001343 7.4e-07 57.8 62 48.4
Rhsim11G0133100 Rhododendron simsii HOM05D000028 ORTHO05D001343 7.4e-07 57.8 65 41.5
TWI14G0210 Tripterygium wilfordii HOM05D000028 ORTHO05D001343 7.4e-07 57.8 72 47.2
Lj6g0018913 Lotus japonicus HOM05D000028 ORTHO05D001343 9.7e-07 57.4 72 47.2
GSVIVG01026602001 Vitis vinifera HOM05D000028 ORTHO05D001343 9.7e-07 57.4 63 52.4
GSVIVG01026605001 Vitis vinifera HOM05D000028 ORTHO05D001343 9.7e-07 57.4 63 52.4
CiPaw.07G026600 Carya illinoinensis HOM05D000028 ORTHO05D001343 1.3e-06 57.0 65 46.2
MD11G1290000 Malus domestica HOM05D000028 ORTHO05D001343 1.3e-06 57.0 64 48.4
Oeu012732.2 Olea europaea HOM05D000028 ORTHO05D001343 1.3e-06 57.0 72 45.8
TPR.G19720 Trifolium pratense HOM05D000028 ORTHO05D001343 1.3e-06 57.0 67 47.8
CiPaw.07G026200 Carya illinoinensis HOM05D000028 ORTHO05D001343 1.6e-06 56.6 65 46.2
FvH4_5g30371 Fragaria vesca HOM05D000028 ORTHO05D001343 1.6e-06 56.6 75 41.3
FAN08G2857 Fragaria x ananassa HOM05D000028 ORTHO05D001343 1.6e-06 56.6 75 41.3
FAN18G2739 Fragaria x ananassa HOM05D000028 ORTHO05D001343 1.6e-06 56.6 75 41.3
Gohir.A12G033200 Gossypium hirsutum HOM05D000028 ORTHO05D001343 1.6e-06 56.6 62 46.8
HanXRQChr03g0067651 Helianthus annuus HOM05D000028 ORTHO05D001343 1.6e-06 56.6 72 47.2
Sabra01G0082000 Salix brachista HOM05D000028 ORTHO05D001343 1.6e-06 56.6 65 49.2
vmacro01797 Vaccinium macrocarpon HOM05D000028 ORTHO05D001343 1.6e-06 56.6 75 40.0
Actinidia00230 Actinidia chinensis HOM05D000028 ORTHO05D001343 2.2e-06 56.2 65 43.1
MD08G1223600 Malus domestica HOM05D000028 ORTHO05D001343 2.2e-06 56.2 60 50.0
MD15G1417300 Malus domestica HOM05D000028 ORTHO05D001343 2.2e-06 56.2 64 45.3
Medtr2g007990 Medicago truncatula HOM05D000028 ORTHO05D001343 2.2e-06 56.2 67 47.8
Psat1g219120 Pisum sativum HOM05D000028 ORTHO05D001343 2.2e-06 56.2 69 46.4
QL11p018927 Quercus lobata HOM05D000028 ORTHO05D001343 2.2e-06 56.2 71 43.7
RcHm_v2.0_Chr7g0224831 Rosa chinensis HOM05D000028 ORTHO05D001343 2.2e-06 56.2 64 45.3
SGA_v2.0_scaffold45G17273 Striga asiatica HOM05D000028 ORTHO05D001343 2.2e-06 56.2 65 44.6
SGA_v2.0_scaffold83G26262 Striga asiatica HOM05D000028 ORTHO05D001343 2.2e-06 56.2 69 40.6
Ca_00104_v3 Cicer arietinum L. HOM05D000028 ORTHO05D001343 2.8e-06 55.8 70 44.3
Medtr2g007260 Medicago truncatula HOM05D000028 ORTHO05D001343 2.8e-06 55.8 48 62.5
FAN18G4582 Fragaria x ananassa HOM05D000028 ORTHO05D001343 3.7e-06 55.5 70 44.3
Glyma.08G182900 Glycine max HOM05D000028 ORTHO05D001343 3.7e-06 55.5 72 44.4
VMungo0540G0917 Vigna mungo HOM05D000028 ORTHO05D001343 3.7e-06 55.5 70 41.4
VMungo0540G1722 Vigna mungo HOM05D000028 ORTHO05D001343 3.7e-06 55.5 65 49.2
CiPaw.07G026300 Carya illinoinensis HOM05D000028 ORTHO05D001343 4.8e-06 55.1 65 46.2
Glyma.08G076700 Glycine max HOM05D000028 ORTHO05D001343 4.8e-06 55.1 72 41.7
Glyma.15G049800 Glycine max HOM05D000028 ORTHO05D001343 4.8e-06 55.1 67 46.3
HanXRQChr03g0067671 Helianthus annuus HOM05D000028 ORTHO05D001343 4.8e-06 55.1 72 47.2
Oeu000652.2 Olea europaea HOM05D000028 ORTHO05D001343 4.8e-06 55.1 70 45.7
CSS0025756 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D011789 6.3e-06 54.7 65 44.6
Ca_00101_v3 Cicer arietinum L. HOM05D000028 ORTHO05D001343 6.3e-06 54.7 65 47.7
CAN.G54.1 Capsicum annuum HOM05D000028 ORTHO05D001343 8.2e-06 54.3 65 43.1
FAN13G2321 Fragaria x ananassa HOM05D000028 ORTHO05D001343 8.2e-06 54.3 64 42.2
Psat1g218800 Pisum sativum HOM05D000028 ORTHO05D001343 8.2e-06 54.3 72 41.7


User provided reference genes

Program Settings