Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.5e-250 868.2 422 100.0
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.2e-233 812.0 420 94.3
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 6.3e-233 810.4 420 93.1
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 7.2e-229 797.0 420 91.4
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 9.4e-229 796.6 420 91.4
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.3e-227 792.0 420 90.7
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.2e-223 779.6 420 90.5
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.3e-222 776.2 420 89.8
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.2e-221 771.5 420 89.8
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 8.8e-211 736.9 420 84.0
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.5e-210 736.1 420 82.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.6e-207 726.1 420 83.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 6.1e-204 714.1 420 81.0
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 3.0e-203 711.8 420 81.2
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 6.8e-203 710.7 420 80.7
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 2.0e-202 709.1 420 78.6
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 4.4e-202 708.0 420 80.2
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 7.5e-202 707.2 420 80.2
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.2e-201 705.7 421 80.3
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 1.6e-199 699.5 419 79.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 4.5e-199 698.0 420 80.0
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 4.5e-199 698.0 420 80.7
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 4.5e-199 698.0 420 78.6
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.3e-198 695.7 420 78.8
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.3e-198 695.7 420 78.8
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 2.9e-198 695.3 420 79.0
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 6.1e-196 687.6 420 78.1
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 6.4e-193 677.6 420 77.9
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.1e-192 674.9 420 77.9
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 77.9
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.3e-190 669.8 420 76.4
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 3.0e-190 668.7 420 74.5
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 3.0e-190 668.7 420 75.2
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 5.0e-190 667.9 422 75.4
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 6.6e-190 667.5 422 75.6
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 6.6e-190 667.5 420 76.7
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 6.6e-190 667.5 405 78.5
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 8.6e-190 667.2 420 76.0
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 1.6e-188 662.9 420 76.4
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.6e-188 662.9 420 76.4
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.0e-188 660.6 420 76.2
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 1.5e-186 656.4 420 74.5
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 4.4e-186 654.8 421 75.3
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.3e-185 653.3 420 74.5
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.9e-185 652.1 420 74.8
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.9e-184 649.4 420 74.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.9e-184 649.4 420 74.8
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 1.2e-183 646.7 420 73.1
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 3.5e-183 645.2 421 73.4
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 4.6e-183 644.8 420 74.3
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.3e-182 642.5 420 72.4
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.5e-181 639.8 420 73.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.9e-181 639.4 420 72.9
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.5e-181 639.0 420 72.4
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 73.1
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.6e-180 636.3 415 72.3
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.1e-180 636.0 420 71.9
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 6.2e-180 634.4 422 72.3
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 8.1e-180 634.0 421 73.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.1e-179 633.6 420 71.7
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 3.1e-179 632.1 421 73.4
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.1e-179 632.1 420 72.4
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.2e-179 631.3 425 70.8
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 5.2e-179 631.3 425 70.8
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.4e-178 628.2 421 72.7
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.8e-178 627.9 425 70.1
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 71.4
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 3.7e-177 625.2 420 72.1
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 3.7e-177 625.2 420 71.7
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.4e-176 622.5 425 70.6
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.4e-176 622.5 423 72.8
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 4.1e-176 621.7 421 71.0
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 4.1e-176 621.7 422 70.1
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 7.1e-176 620.9 420 71.4
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 4.6e-175 618.2 420 68.1
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 7.8e-175 617.5 420 71.7
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.0e-174 617.1 424 71.0
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.7e-174 616.3 420 69.8
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.9e-174 615.1 421 70.3
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.9e-174 615.1 423 70.7
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 5.1e-174 614.8 420 71.2
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 3.3e-173 612.1 420 70.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 7.3e-173 610.9 407 72.5
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 2.8e-172 609.0 420 68.6
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.8e-172 609.0 421 69.4
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 6.2e-172 607.8 420 68.3
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 6.8e-171 604.4 407 70.5
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.9e-169 598.2 420 69.0
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 8.4e-169 597.4 420 70.0
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 4.1e-168 595.1 420 69.0
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.6e-167 593.2 420 68.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.7e-166 589.7 422 66.8
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 6.6e-166 587.8 421 68.6
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 8.7e-166 587.4 421 70.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 3.3e-165 585.5 420 67.1
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 9.6e-165 583.9 420 67.4
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 2.1e-164 582.8 420 67.4
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 4.7e-164 581.6 420 67.1
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.4e-163 580.1 420 68.8
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 2.4e-163 579.3 420 66.7
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 66.2
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 1.1e-160 570.5 420 66.7
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.3e-160 567.4 377 71.4
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.2e-159 567.0 420 64.5
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.2e-154 550.4 421 66.7
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 8.4e-153 544.3 420 60.7
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.7e-151 539.3 421 60.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.3e-150 537.0 420 61.0
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 8.7e-150 534.3 424 64.2
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.5e-149 532.7 421 64.8
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 4.3e-149 531.9 421 64.8
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.2e-145 519.6 425 59.3
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 7.4e-141 504.6 282 86.9
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 5.5e-136 488.4 421 57.0
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 8.5e-129 464.5 357 66.7
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.1e-125 454.1 405 54.8
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 5.0e-121 438.7 425 52.7
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 5.5e-120 435.3 251 82.5
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.1e-115 421.0 425 51.3
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.4e-112 410.6 325 62.5
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.4e-112 410.6 411 48.4
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 8.2e-108 394.8 422 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.8e-94 350.5 374 46.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 2.8e-92 343.2 302 58.6
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 5.4e-91 339.0 412 45.9
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 9.1e-91 338.2 300 54.7
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.6e-90 337.4 249 62.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.1e-75 288.1 317 45.4
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.6e-71 273.1 269 54.6
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 7.8e-66 255.4 134 88.1
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 4.7e-47 193.0 131 71.0
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 5.8e-45 186.0 155 60.6
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-37 161.4 99 75.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 3.9e-33 146.7 91 74.7
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.4e-28 129.4 74 78.4
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.4e-27 128.3 71 80.3
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.6e-26 123.2 71 78.9
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 3.0e-25 120.6 104 55.8
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 6.7e-25 119.4 71 77.5
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.7e-25 119.4 71 77.5
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 2.8e-23 114.0 97 60.8
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 1.4e-11 75.1 249 25.7
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 7.9e-10 69.3 439 23.2
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.0e-09 68.9 239 28.0
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.0e-09 68.9 239 28.0
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.0e-09 68.9 239 28.0
FvH4_3g17080 Fragaria vesca HOM05D000051 ORTHO05D000015 1.8e-09 68.2 246 22.8
FAN11G0701 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.8e-09 68.2 246 22.8
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 2.3e-09 67.8 421 23.5
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 3.9e-09 67.0 193 31.1
Gohir.D09G095200 Gossypium hirsutum HOM05D003488 ORTHO05D004214 3.9e-09 67.0 341 24.0
Medtr4g057725 Medicago truncatula HOM05D000312 ORTHO05D000221 5.1e-09 66.6 221 25.3
Solyc08g015710.2 Solanum lycopersicum HOM05D001396 ORTHO05D000493 8.8e-09 65.9 248 24.6
Gorai.006G111900 Gossypium raimondii HOM05D003488 ORTHO05D004214 1.1e-08 65.5 341 23.8
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 1.5e-08 65.1 210 26.7
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 3.3e-08 63.9 423 23.9
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-08 63.9 242 28.5
Peaxi162Scf00045g00458 Petunia axillaris HOM05D001396 ORTHO05D000493 4.3e-08 63.5 239 27.2
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 7.4e-08 62.8 351 24.8
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 9.7e-08 62.4 316 23.7
Lsat_1_v5_gn_7_12420 Lactuca sativa HOM05D000051 ORTHO05D000015 9.7e-08 62.4 342 23.1
Medtr1g021825 Medicago truncatula HOM05D000312 ORTHO05D000221 1.3e-07 62.0 213 25.8
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.3e-07 62.0 212 24.5
CARHR148020 Cardamine hirsuta HOM05D000051 ORTHO05D000015 1.7e-07 61.6 267 23.6
CBR_g31165 Chara braunii HOM05D019043 ORTHO05D020397 1.7e-07 61.6 305 26.6
Glyma.17G247500 Glycine max HOM05D000312 ORTHO05D000221 1.7e-07 61.6 212 24.5
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 1.7e-07 61.6 237 26.6
MSTRG.25133 Avicennia marina HOM05D000312 ORTHO05D000221 2.2e-07 61.2 237 26.2
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 2.8e-07 60.8 313 23.3
Nitab4.5_0001770g0190 Nicotiana tabacum HOM05D001396 ORTHO05D000493 4.8e-07 60.1 239 25.5
PGSC0003DMG400006279 Solanum tuberosum HOM05D001396 ORTHO05D000493 4.8e-07 60.1 245 26.1
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 8.2e-07 59.3 237 28.7
Migut.E01603 Erythranthe guttata HOM05D005930 ORTHO05D003423 1.1e-06 58.9 247 24.7
Cc10_g03500 Coffea canephora HOM05D000312 ORTHO05D000221 1.8e-06 58.2 210 25.2
Migut.E00914 Erythranthe guttata HOM05D005930 ORTHO05D003423 1.8e-06 58.2 142 29.6
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 1.8e-06 58.2 148 31.1
ATR0584G137 Amborella trichopoda HOM05D000312 ORTHO05D000221 2.4e-06 57.8 196 27.0
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 2.4e-06 57.8 241 28.2
Medtr1g021820 Medicago truncatula HOM05D000312 ORTHO05D000221 2.4e-06 57.8 213 24.9
Migut.E00533 Erythranthe guttata HOM05D005930 ORTHO05D003423 4.1e-06 57.0 244 26.6
Psat6g024480 Pisum sativum HOM05D000312 ORTHO05D000221 5.3e-06 56.6 213 23.5


User provided reference genes

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