Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.1e-164 583.2 282 100.0
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.9e-140 502.7 282 86.9
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 6.9e-135 484.2 282 84.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 9.0e-135 483.8 282 83.0
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.1e-132 476.9 282 82.3
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.4e-132 476.5 282 81.9
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.2e-132 474.9 282 81.6
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.5e-131 471.9 282 81.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 3.5e-131 471.9 282 81.6
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.0e-130 468.8 282 80.9
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.1e-124 450.3 282 77.3
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 2.8e-120 435.6 282 73.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 2.8e-120 435.6 282 72.3
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 6.3e-120 434.5 282 72.3
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 3.1e-119 432.2 282 73.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.0e-117 427.2 282 71.3
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.7e-117 426.4 282 72.0
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 2.2e-117 426.0 282 72.7
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 3.8e-117 425.2 282 70.9
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 6.5e-117 424.5 282 71.3
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 8.5e-117 424.1 278 73.7
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.1e-116 423.7 282 70.9
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 4.2e-116 421.8 281 71.5
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 9.4e-116 420.6 282 72.0
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.0e-114 417.2 282 72.3
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.4e-114 416.8 282 69.9
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.9e-114 415.2 282 69.9
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 6.7e-114 414.5 282 70.6
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 8.8e-114 414.1 282 69.1
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-113 413.3 282 70.2
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 1.5e-113 413.3 282 69.1
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.5e-113 412.5 282 69.9
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.5e-113 412.5 282 69.9
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.3e-113 412.1 282 70.6
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-113 411.8 282 68.4
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 5.7e-113 411.4 282 70.9
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 5.7e-113 411.4 282 68.4
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 7.4e-113 411.0 282 70.9
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 2.8e-112 409.1 282 68.8
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.8e-111 406.4 278 69.8
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.8e-111 406.4 282 69.9
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.4e-111 406.0 282 68.1
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 4.1e-111 405.2 282 69.9
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.1e-111 405.2 282 69.9
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 6.9e-111 404.4 282 69.5
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 9.1e-111 404.1 278 68.3
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.5e-110 403.3 282 69.5
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.6e-110 402.5 282 68.8
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 4.5e-110 401.7 282 67.0
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.0e-109 400.6 282 68.1
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.0e-109 400.6 282 68.1
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.7e-109 399.8 278 67.6
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.7e-109 399.8 282 69.9
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.2e-109 399.4 282 67.0
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.9e-109 399.1 282 67.0
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 3.8e-109 398.7 282 68.4
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 3.8e-109 398.7 282 68.1
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.4e-108 396.7 282 68.1
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 3.2e-108 395.6 282 67.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 4.2e-108 395.2 282 66.0
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 7.2e-108 394.4 282 66.3
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 7.2e-108 394.4 282 65.6
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.6e-107 393.3 278 67.3
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.1e-107 392.9 282 66.0
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 2.7e-107 392.5 283 66.8
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.7e-106 387.9 282 66.3
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 8.8e-106 387.5 282 65.2
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.1e-105 387.1 282 66.3
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.5e-105 386.7 282 66.0
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.5e-105 386.7 282 66.0
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.0e-105 386.3 282 66.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 2.6e-105 386.0 282 66.3
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 3.7e-104 382.1 282 64.2
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 8.2e-104 380.9 282 63.1
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.2e-104 380.9 282 64.9
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.4e-103 380.2 282 64.2
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 2.4e-103 379.4 269 67.3
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.1e-103 379.0 282 62.8
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 4.1e-103 378.6 282 63.8
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 7.0e-103 377.9 251 72.1
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.5e-102 376.7 282 61.3
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.0e-102 376.3 282 63.5
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 2.0e-102 376.3 282 64.2
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 4.5e-102 375.2 282 64.5
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 5.9e-102 374.8 282 65.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 7.7e-102 374.4 267 67.0
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 7.7e-102 374.4 282 62.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.2e-101 372.9 282 63.1
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.2e-101 372.9 282 66.3
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.5e-100 370.2 282 63.8
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.2e-100 369.0 282 62.8
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.1e-99 366.3 282 62.1
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 2.7e-99 365.9 282 62.8
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 3.6e-99 365.5 282 62.4
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 6.1e-99 364.8 277 62.8
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 7.4e-97 357.8 282 61.3
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 9.7e-97 357.5 282 61.0
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 9.7e-97 357.5 282 61.0
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.3e-96 357.1 282 60.3
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 1.3e-96 357.1 278 61.9
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 3.7e-96 355.5 282 60.3
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 4.8e-96 355.1 282 61.0
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 8.2e-96 354.4 282 59.9
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 6.5e-93 344.7 282 62.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.5e-92 343.6 282 61.0
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 3.2e-92 342.4 276 59.4
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.2e-92 342.4 282 60.3
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 4.2e-92 342.0 282 60.6
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 7.2e-92 341.3 239 66.5
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 8.0e-91 337.8 282 60.3
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.3e-90 336.3 282 55.7
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.3e-90 336.3 282 59.9
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 5.2e-90 335.1 282 56.0
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.1e-87 327.4 282 56.4
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.0e-82 310.8 278 54.3
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 8.3e-80 301.2 282 52.5
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.6e-75 287.0 264 52.3
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 5.7e-73 278.5 282 49.6
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 3.5e-70 269.2 282 47.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 4.6e-70 268.9 204 62.3
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 4.9e-64 248.8 269 43.9
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 5.6e-60 235.3 134 79.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.6e-59 233.8 284 44.0
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 8.9e-58 228.0 269 47.2
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.5e-57 227.3 227 50.2
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.6e-57 226.5 282 42.9
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 5.1e-53 212.2 222 43.7
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 5.1e-53 212.2 263 42.6
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.6e-38 164.1 160 46.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.7e-37 160.6 155 53.5
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.3e-34 149.1 98 69.4
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.0e-33 147.1 110 58.2
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.7e-29 134.0 90 67.8
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-25 119.0 73 71.2
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.7e-24 117.5 70 72.9
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 5.5e-23 112.5 70 71.4
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 7.9e-22 108.6 70 70.0
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 7.9e-22 108.6 70 70.0
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 7.4e-20 102.1 104 46.2
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 2.3e-13 80.5 57 61.4
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 4.5e-09 66.2 55 58.2
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 1.6e-06 57.8 105 39.0


User provided reference genes

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