Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 2.0e-55 218.8 107 100.0
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 1.4e-35 152.9 107 76.6
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.4e-32 141.0 111 64.9
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.2e-31 139.8 111 64.9
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 3.0e-30 135.2 105 63.8
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 8.7e-30 133.7 107 67.3
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.3e-29 131.7 107 66.4
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 5.6e-29 131.0 102 70.6
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.6e-29 131.0 107 66.4
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 4.9e-17 91.3 94 47.9
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 6.4e-17 90.9 90 52.2
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 8.4e-17 90.5 98 49.0
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 5.5e-16 87.8 94 51.1
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 5.5e-16 87.8 101 47.5
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 6.0e-15 84.3 88 51.1
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 6.0e-15 84.3 80 56.2
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.3e-14 83.2 96 45.8
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.8e-14 82.8 106 44.3
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 1.8e-14 82.8 101 46.5
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.8e-14 82.8 105 48.6
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 3.0e-14 82.0 105 44.8
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 3.9e-14 81.6 84 48.8
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 3.9e-14 81.6 77 54.5
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 5.1e-14 81.3 97 44.3
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 8.7e-14 80.5 95 48.4
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.1e-13 80.1 78 53.8
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.5e-13 79.7 98 46.9
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.9e-13 79.3 79 49.4
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.5e-13 79.0 84 51.2
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 2.5e-13 79.0 98 39.8
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.5e-13 79.0 87 52.9
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 9.6e-13 77.0 84 46.4
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 1.3e-12 76.6 85 48.2
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.6e-12 76.3 84 47.6
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 1.6e-12 76.3 90 46.7
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.6e-12 76.3 103 44.7
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 2.8e-12 75.5 84 44.0
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 3.7e-12 75.1 77 51.9
Gohir.D06G095850 Gossypium hirsutum HOM05D007227 ORTHO05D047527 3.7e-12 75.1 78 57.7
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 3.7e-12 75.1 84 44.0
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 6.2e-12 74.3 82 51.2
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 6.2e-12 74.3 77 50.6
Gorai.010G110400 Gossypium raimondii HOM05D007227 ORTHO05D047527 6.2e-12 74.3 78 56.4
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 6.2e-12 74.3 107 45.8
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 1.1e-11 73.6 87 48.3
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.1e-11 73.6 89 42.7
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.1e-11 73.6 86 50.0
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 1.1e-11 73.6 110 40.0
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.4e-11 73.2 83 48.2
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 1.4e-11 73.2 107 41.1
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 1.4e-11 73.2 84 46.4
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 1.4e-11 73.2 100 42.0
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.4e-11 72.4 97 43.3
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 2.4e-11 72.4 94 42.6
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 3.1e-11 72.0 81 48.1
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 3.1e-11 72.0 67 56.7
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 3.1e-11 72.0 102 43.1
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 3.1e-11 72.0 95 42.1
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 3.1e-11 72.0 75 45.3
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 4.0e-11 71.6 74 54.1
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 6.9e-11 70.9 97 42.3
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 9.0e-11 70.5 103 37.9
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.2e-10 70.1 77 46.8
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.5e-10 69.7 112 42.9
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.0e-10 69.3 104 40.4
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 2.0e-10 69.3 77 49.4
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.0e-10 69.3 107 40.2
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.6e-10 68.9 79 44.3
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 2.6e-10 68.9 79 44.3
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 2.6e-10 68.9 83 48.2
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 3.4e-10 68.6 108 38.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 3.4e-10 68.6 101 39.6
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 4.5e-10 68.2 71 46.5
COL.COLO4_37463 Corchorus olitorius HOM05D007556 ORTHO05D002252 7.6e-10 67.4 88 42.0
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 7.6e-10 67.4 71 43.7
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 1.0e-09 67.0 94 38.3
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.3e-09 66.6 68 47.1
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.3e-09 66.6 97 41.2
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 1.7e-09 66.2 105 38.1
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.2e-09 65.9 104 37.5
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 2.2e-09 65.9 79 44.3
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 2.2e-09 65.9 102 39.2
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 3.8e-09 65.1 80 50.0
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 3.8e-09 65.1 70 48.6
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 4.9e-09 64.7 86 41.9
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 6.5e-09 64.3 89 40.4
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 6.5e-09 64.3 87 41.4
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 8.4e-09 63.9 74 45.9
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 8.4e-09 63.9 76 46.1
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 1.1e-08 63.5 83 44.6
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.1e-08 63.5 63 49.2
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 1.4e-08 63.2 98 42.9
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 1.4e-08 63.2 106 39.6
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.4e-08 63.2 102 40.2
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 1.4e-08 63.2 79 40.5
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.4e-08 63.2 70 47.1
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.9e-08 62.8 93 38.7
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 1.9e-08 62.8 86 44.2
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 1.9e-08 62.8 92 39.1
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.9e-08 62.8 75 42.7
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.5e-08 62.4 79 46.8
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 2.5e-08 62.4 77 39.0
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 3.2e-08 62.0 85 40.0
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 4.2e-08 61.6 100 33.0
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 4.2e-08 61.6 90 40.0
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 4.2e-08 61.6 92 41.3
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 5.5e-08 61.2 88 38.6
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 5.5e-08 61.2 70 45.7
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 5.5e-08 61.2 72 43.1
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 7.1e-08 60.8 92 38.0
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 1.2e-07 60.1 109 35.8
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 1.2e-07 60.1 71 43.7
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 2.1e-07 59.3 59 44.1
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 2.1e-07 59.3 80 41.2
HanXRQChr01g0007701 Helianthus annuus HOM05D017364 ORTHO05D002252 2.7e-07 58.9 79 41.8
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 2.7e-07 58.9 78 42.3
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 2.7e-07 58.9 63 42.9
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 2.7e-07 58.9 77 44.2
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.5e-07 58.5 92 35.9
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 4.6e-07 58.2 57 43.9
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 4.6e-07 58.2 71 43.7
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 6.0e-07 57.8 118 35.6
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 6.0e-07 57.8 84 38.1
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 6.0e-07 57.8 46 63.0
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 6.0e-07 57.8 107 36.4
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 6.0e-07 57.8 67 43.3
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 6.0e-07 57.8 92 34.8
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 1.0e-06 57.0 68 39.7
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 1.3e-06 56.6 76 38.2
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 1.8e-06 56.2 73 38.4
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 1.8e-06 56.2 57 43.9
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.8e-06 56.2 59 45.8
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 1.8e-06 56.2 104 33.7
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 2.3e-06 55.8 101 38.6
HanXRQChr13g0410611 Helianthus annuus HOM05D017364 ORTHO05D002252 2.3e-06 55.8 83 36.1
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.3e-06 55.8 103 35.0
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.3e-06 55.8 92 33.7
DCAR_022107 Daucus carota HOM05D007556 ORTHO05D002252 3.0e-06 55.5 57 45.6
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 3.0e-06 55.5 107 35.5
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 3.9e-06 55.1 79 36.7
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.9e-06 55.1 88 35.2
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 5.1e-06 54.7 81 39.5
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 5.1e-06 54.7 46 60.9
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 5.1e-06 54.7 87 34.5
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 6.7e-06 54.3 97 35.1
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 6.7e-06 54.3 43 53.5
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 8.7e-06 53.9 60 46.7
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 8.7e-06 53.9 74 40.5
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 8.7e-06 53.9 74 40.5
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 8.7e-06 53.9 52 50.0
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 8.7e-06 53.9 40 55.0
PGR042G3705 Punica granatum HOM05D007556 ORTHO05D002252 8.7e-06 53.9 97 36.1


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