Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 0.0e+00 1312.0 700 100.0
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 4.1e-261 904.8 696 75.0
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 6.3e-254 880.9 682 74.2
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.8e-184 650.2 712 59.6
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.3e-179 633.3 773 55.1
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.1e-168 597.8 534 67.6
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.9e-166 589.7 632 60.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 4.6e-148 529.3 740 50.1
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 3.9e-147 526.2 727 50.5
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.6e-145 520.8 731 50.5
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 2.4e-144 516.9 724 49.3
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.2e-142 510.4 733 48.7
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 6.1e-140 502.3 742 48.5
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.3e-137 494.6 755 46.8
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.8e-136 490.7 727 48.3
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.5e-135 487.6 739 48.2
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 6.5e-134 482.3 711 47.5
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.1e-132 477.2 730 48.8
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.8e-131 471.9 731 49.0
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.0e-130 470.7 728 49.2
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.0e-130 470.7 728 49.2
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.4e-130 468.8 731 48.8
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.0e-126 456.1 766 46.3
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-123 447.2 395 70.1
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 9.7e-122 441.8 714 46.1
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.0e-119 434.1 792 42.4
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.3e-118 431.4 691 47.2
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 3.8e-118 429.9 712 46.8
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 4.2e-117 426.4 725 44.6
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.1e-109 401.7 759 42.2
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 8.0e-108 395.6 666 45.9
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.7e-105 387.9 749 41.4
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 2.2e-105 387.5 532 51.5
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.1e-104 383.6 721 43.3
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 3.1e-104 383.6 722 41.8
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 4.1e-104 383.3 732 40.8
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 7.0e-104 382.5 595 45.9
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 2.3e-102 377.5 708 42.5
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.5e-101 374.8 724 42.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.5e-101 374.0 720 41.2
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 6.1e-100 369.4 718 41.8
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 8.0e-100 369.0 581 46.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 5.7e-98 362.8 703 42.0
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.3e-97 361.7 709 41.0
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 3.7e-97 360.1 740 39.9
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.7e-97 360.1 782 37.6
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.0e-96 355.9 816 37.4
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 4.6e-95 353.2 718 39.3
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 1.5e-93 348.2 739 39.0
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.9e-93 347.8 765 39.1
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.0e-92 342.4 729 39.5
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 4.0e-91 340.1 712 39.9
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 5.2e-91 339.7 706 40.9
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.5e-90 338.2 718 39.6
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.6e-90 337.4 702 40.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.7e-89 334.7 725 38.6
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.7e-89 333.6 740 39.7
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 7.0e-88 329.3 716 39.2
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.2e-87 328.6 738 38.2
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 6.0e-87 326.2 739 38.4
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.5e-85 321.6 721 38.1
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-85 321.2 709 39.9
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 2.5e-85 320.9 739 38.4
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 7.3e-85 319.3 706 39.8
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 8.1e-84 315.8 674 39.3
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 2.3e-83 314.3 731 36.9
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 6.8e-83 312.8 709 39.4
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 8.9e-83 312.4 709 39.2
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 3.4e-82 310.5 586 43.2
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-81 308.5 711 38.4
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.3e-81 308.5 741 36.7
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.7e-81 308.1 813 34.8
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.2e-81 307.8 737 37.6
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.7e-81 307.0 826 35.1
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.7e-81 307.0 732 37.2
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 8.3e-81 305.8 705 38.0
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.4e-80 305.1 732 36.1
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.4e-80 304.3 718 38.3
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 5.4e-80 303.1 624 39.3
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 7.1e-80 302.8 717 36.5
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 2.1e-79 301.2 813 33.9
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.3e-78 297.7 724 37.0
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.9e-78 297.0 714 36.8
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 2.5e-77 294.3 740 37.2
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 4.3e-77 293.5 564 43.8
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 8.1e-76 289.3 647 40.3
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 8.9e-75 285.8 730 35.6
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 5.8e-74 283.1 624 39.6
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 5.8e-74 283.1 669 38.3
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.7e-71 274.2 838 31.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.0e-70 272.3 734 36.4
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 3.0e-70 270.8 713 35.1
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.3e-69 267.3 642 39.3
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 3.3e-69 267.3 494 42.1
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.2e-68 265.4 702 37.0
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.6e-68 265.0 732 35.0
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 1.4e-67 261.9 691 32.9
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 4.0e-67 260.4 612 38.6
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 9.0e-67 259.2 717 33.9
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 2.0e-66 258.1 695 35.7
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-64 251.5 700 34.7
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 7.3e-61 239.6 830 31.9
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.1e-60 238.0 318 47.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 2.8e-60 237.7 761 32.2
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 5.3e-59 233.4 217 59.0
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 8.4e-57 226.1 326 46.9
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 3.0e-54 217.6 363 44.9
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 8.7e-54 216.1 746 32.2
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 9.6e-53 212.6 208 60.6
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 7.9e-47 193.0 481 38.5
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.5e-37 162.2 486 35.2
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.9e-37 161.8 506 31.2
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 3.3e-37 161.0 706 29.3
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 4.2e-32 144.1 759 29.0
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 9.3e-32 142.9 140 60.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.9e-29 135.2 644 27.8
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.4e-27 128.3 414 32.9
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.1e-27 127.9 368 33.7
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.0e-25 122.9 99 66.7
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.0e-25 122.9 502 29.1
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 4.7e-23 114.0 620 28.2
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 3.0e-22 111.3 116 60.3
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.7e-17 95.5 82 57.3
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 8.8e-14 83.2 134 43.3
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.0e-13 82.0 91 53.8
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.8e-12 78.2 171 35.1
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 3.7e-12 77.8 170 39.4
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.0e-10 72.0 144 39.6
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.3e-09 69.3 55 61.8
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 2.9e-09 68.2 357 28.9
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 2.9e-09 68.2 86 47.7
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 3.2e-08 64.7 145 35.9
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 2.1e-07 62.0 49 61.2
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 8.0e-07 60.1 165 36.4
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 6.7e-06 57.0 130 34.6


User provided reference genes

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