Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 3.7e-87 325.1 197 100.0
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.8e-65 253.1 201 79.1
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.1e-59 233.8 200 76.0
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 9.9e-56 220.7 199 70.9
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.4e-54 216.1 199 69.8
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 8.7e-52 207.6 199 64.8
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.8e-50 202.6 124 87.9
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.4e-49 200.3 199 67.8
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 6.9e-49 198.0 199 62.8
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 6.7e-44 181.4 199 62.8
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 3.1e-41 172.6 201 59.2
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.3e-39 167.2 204 60.8
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 3.8e-39 165.6 202 58.9
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.9e-38 163.3 200 55.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 3.2e-38 162.5 203 54.2
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 5.5e-38 161.8 201 59.2
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.2e-37 160.6 201 53.2
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 1.6e-37 160.2 196 59.7
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.6e-37 160.2 206 59.7
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 2.7e-37 159.5 189 60.3
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.7e-37 159.5 210 57.1
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 4.6e-37 158.7 200 54.5
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.0e-36 157.5 198 56.6
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.3e-36 157.1 222 50.9
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.8e-36 156.8 208 55.8
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.1e-36 155.2 205 56.1
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.1e-35 154.1 203 56.2
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.9e-35 153.3 141 63.8
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.5e-35 152.9 206 55.3
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 3.3e-35 152.5 205 59.5
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 5.7e-35 151.8 235 48.5
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 7.4e-35 151.4 210 51.9
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 9.7e-35 151.0 200 53.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.6e-34 150.2 222 53.6
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 3.7e-34 149.1 138 63.0
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 3.7e-34 149.1 204 52.0
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 4.8e-34 148.7 202 51.5
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 8.2e-34 147.9 207 51.2
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-33 147.5 142 59.2
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.8e-33 146.7 138 62.3
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.8e-33 146.7 202 52.5
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 2.4e-33 146.4 206 52.4
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 2.4e-33 146.4 206 54.4
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.1e-33 145.6 139 60.4
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 4.1e-33 145.6 140 60.0
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 5.3e-33 145.2 137 60.6
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.2e-32 144.1 133 60.2
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 1.2e-32 144.1 196 54.1
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.2e-32 144.1 201 53.2
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.2e-32 144.1 205 48.8
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 2.0e-32 143.3 133 61.7
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.0e-32 143.3 198 57.1
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.5e-32 142.1 198 52.0
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 5.9e-32 141.7 203 54.7
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 5.9e-32 141.7 212 53.8
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.9e-32 141.7 124 66.9
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 7.7e-32 141.4 201 51.7
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 7.7e-32 141.4 211 48.3
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 7.7e-32 141.4 196 54.1
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 7.7e-32 141.4 186 54.8
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.0e-31 141.0 134 58.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.9e-31 139.4 142 58.5
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 3.8e-31 139.0 140 61.4
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 5.0e-31 138.7 124 66.1
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 5.0e-31 138.7 139 61.2
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 6.5e-31 138.3 197 53.8
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.5e-30 136.3 197 53.3
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.2e-30 136.0 200 49.5
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 3.2e-30 136.0 201 53.7
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 5.5e-30 135.2 138 58.0
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 7.2e-30 134.8 202 47.0
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 9.4e-30 134.4 141 61.0
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.6e-29 133.7 126 62.7
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 2.1e-29 133.3 199 53.8
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.7e-29 132.9 134 62.7
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.6e-29 132.1 195 50.3
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.6e-29 132.1 199 45.2
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 6.1e-29 131.7 122 63.9
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 7.9e-29 131.3 203 49.3
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.0e-28 131.0 186 54.8
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.8e-28 130.2 200 54.5
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.8e-28 130.2 211 50.2
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.3e-28 129.8 195 50.8
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.3e-28 129.8 202 51.0
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 2.3e-28 129.8 196 50.0
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 3.0e-28 129.4 201 51.2
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 3.9e-28 129.0 196 48.5
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 6.7e-28 128.3 146 54.1
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.5e-27 127.1 196 45.9
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.5e-27 126.3 140 58.6
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 3.3e-27 125.9 115 62.6
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.2e-26 123.2 145 51.7
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 2.8e-26 122.9 205 47.3
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 3.7e-26 122.5 206 52.4
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 4.8e-26 122.1 132 59.8
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.8e-26 122.1 202 48.0
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 6.3e-26 121.7 109 64.2
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 8.2e-26 121.3 132 55.3
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 8.2e-26 121.3 132 55.3
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 8.2e-26 121.3 132 55.3
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.1e-25 120.9 154 54.5
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.1e-25 120.9 200 45.0
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.4e-25 120.6 125 59.2
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.8e-25 120.2 153 51.6
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 3.1e-25 119.4 137 54.7
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 3.1e-25 119.4 153 51.0
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 3.1e-25 119.4 137 54.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 4.1e-25 119.0 136 50.0
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 5.3e-25 118.6 152 54.6
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 9.1e-25 117.9 132 58.3
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 2.0e-24 116.7 139 54.7
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 4.5e-24 115.5 197 53.3
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 5.9e-24 115.2 208 46.6
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 7.7e-24 114.8 130 54.6
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 7.7e-24 114.8 123 58.5
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 7.7e-24 114.8 221 43.9
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 1.0e-23 114.4 208 51.0
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.8e-23 112.5 98 63.3
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 8.5e-23 111.3 124 54.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 8.5e-23 111.3 124 54.8
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.4e-22 110.5 141 51.1
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.4e-22 110.5 140 52.1
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.9e-22 110.2 63 90.5
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.2e-22 109.4 209 45.5
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 5.5e-22 108.6 127 52.8
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 9.4e-22 107.8 84 65.5
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.4e-20 104.0 149 47.7
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.5e-19 100.5 81 66.7
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 1.5e-19 100.5 198 39.9
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.3e-19 99.4 146 53.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 5.7e-19 98.6 139 45.3
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 7.4e-19 98.2 162 44.4
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.8e-18 95.5 198 41.4
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.8e-18 95.5 198 41.4
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.1e-17 92.8 246 40.2
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.5e-16 90.5 157 44.6
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.0e-16 90.1 205 45.4
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.0e-16 90.1 155 45.8
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 6.5e-15 85.1 127 47.2
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 8.5e-15 84.7 144 43.1
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.5e-14 84.0 197 43.1
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 5.5e-14 82.0 60 75.0
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 6.1e-13 78.6 67 65.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.0e-12 76.3 119 49.6
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.9e-12 75.9 95 54.7
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 6.7e-12 75.1 73 57.5
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.1e-11 74.3 140 38.6
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.3e-10 70.9 123 49.6
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.1e-09 67.8 47 70.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.4e-09 67.4 53 67.9
Gohir.A01G180500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.0e-08 63.5 98 56.1
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 3.2e-06 56.2 103 39.8


User provided reference genes

Program Settings