Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 1.4e-168 596.3 328 100.0
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 2.9e-132 475.7 328 82.3
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 2.7e-130 469.2 351 74.1
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.0e-113 414.1 328 71.3
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 3.0e-113 412.5 328 71.0
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 6.6e-113 411.4 300 74.3
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 6.6e-113 411.4 328 70.7
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 1.2e-85 320.9 332 60.8
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.1e-83 314.3 332 59.3
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.9e-83 313.5 329 56.2
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 4.2e-83 312.4 331 55.3
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.0e-81 307.8 370 51.6
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 3.9e-81 305.8 340 55.9
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 1.1e-80 304.3 329 55.6
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 9.6e-80 301.2 340 56.8
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.3e-79 300.8 329 54.7
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 1.1e-78 297.7 329 53.5
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 1.2e-77 294.3 336 52.4
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.2e-77 294.3 336 51.2
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 3.4e-77 292.7 329 55.3
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 3.4e-77 292.7 333 51.4
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 4.5e-77 292.4 329 53.2
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.7e-76 290.4 329 53.8
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 8.4e-76 288.1 329 51.4
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 1.4e-75 287.3 337 50.4
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.9e-75 287.0 330 53.0
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 4.2e-75 285.8 329 55.0
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.6e-74 283.9 329 53.5
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 1.6e-74 283.9 380 49.2
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 2.1e-74 283.5 337 50.1
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.1e-74 283.5 329 51.4
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 6.0e-74 282.0 332 52.4
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 3.0e-73 279.6 338 50.3
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 3.0e-73 279.6 217 67.3
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.9e-72 276.9 330 52.7
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.1e-71 273.5 329 54.4
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 4.8e-71 272.3 329 52.0
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 6.3e-71 271.9 331 50.8
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 1.1e-70 271.2 329 52.3
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.4e-70 270.8 237 60.8
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 1.4e-70 270.8 331 49.5
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 2.4e-70 270.0 331 49.2
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.2e-69 267.7 339 50.1
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 2.0e-69 266.9 330 49.4
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 2.6e-69 266.5 336 48.8
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 5.9e-69 265.4 331 49.8
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 7.6e-69 265.0 371 47.4
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 8.5e-68 261.5 330 47.6
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 1.1e-67 261.2 330 48.8
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.4e-67 260.8 330 49.7
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 2.5e-67 260.0 329 47.7
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 2.5e-67 260.0 329 49.5
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 5.5e-67 258.8 335 48.7
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 7.2e-67 258.5 328 47.3
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.6e-66 257.3 329 49.8
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.1e-66 256.9 329 52.6
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 4.6e-66 255.8 321 51.1
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 4.6e-66 255.8 329 49.8
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 6.1e-66 255.4 332 48.8
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 7.9e-66 255.0 230 59.6
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 5.1e-65 252.3 329 52.6
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 6.7e-65 251.9 329 48.0
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.5e-64 250.8 329 50.2
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 1.5e-64 250.8 329 50.2
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 1.9e-64 250.4 332 51.5
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.9e-64 250.4 329 50.5
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 1.9e-64 250.4 331 48.0
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.7e-64 248.8 328 46.3
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.3e-63 247.7 329 47.4
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.8e-63 245.7 330 46.1
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.8e-62 243.8 330 46.7
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 3.1e-62 243.0 329 49.5
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 4.1e-62 242.7 330 45.5
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.5e-61 240.7 230 58.3
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.5e-61 240.7 340 46.8
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 2.6e-61 240.0 333 48.9
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 2.6e-61 240.0 333 48.9
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 3.4e-61 239.6 331 47.1
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 7.7e-61 238.4 230 56.5
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.0e-60 238.0 330 44.5
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 2.2e-60 236.9 328 46.0
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.9e-60 236.5 332 46.1
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.1e-59 234.6 329 45.3
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 2.5e-59 233.4 331 45.6
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 4.2e-59 232.6 331 49.2
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 5.5e-59 232.3 331 47.4
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.6e-58 230.7 329 48.0
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 3.6e-58 229.6 332 45.5
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 3.6e-58 229.6 332 45.5
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 3.6e-58 229.6 332 46.4
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 3.6e-58 229.6 332 45.5
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 3.6e-58 229.6 332 46.4
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 6.1e-58 228.8 331 45.3
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 7.9e-58 228.4 333 46.8
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 2.3e-57 226.9 330 44.8
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.5e-56 224.2 329 44.1
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 1.5e-56 224.2 219 57.5
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 3.3e-56 223.0 335 43.9
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 3.3e-56 223.0 328 44.8
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 3.3e-56 223.0 329 45.3
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 4.4e-56 222.6 329 45.9
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 4.4e-56 222.6 328 44.2
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 5.7e-56 222.2 329 44.7
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 5.7e-56 222.2 326 45.7
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 5.7e-56 222.2 329 44.1
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 3.7e-55 219.5 331 43.2
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 4.8e-55 219.2 329 42.2
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 3.1e-54 216.5 329 43.2
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 4.1e-54 216.1 330 45.8
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 5.3e-54 215.7 329 46.5
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.2e-53 214.5 339 45.1
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 2.0e-53 213.8 330 43.9
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 1.0e-52 211.5 331 42.3
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.7e-52 210.7 331 44.7
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.4e-51 207.6 321 43.3
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 4.2e-51 206.1 330 41.8
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 2.1e-50 203.8 240 52.1
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 3.3e-48 196.4 329 41.3
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 4.4e-48 196.1 332 45.8
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 5.7e-48 195.7 330 40.6
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 1.3e-47 194.5 329 44.1
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 1.3e-47 194.5 303 42.2
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 1.3e-47 194.5 243 44.4
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 4.4e-40 169.5 333 35.4
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.7e-39 167.5 329 39.2
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 3.1e-38 163.3 328 40.9
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 3.1e-38 163.3 328 40.9
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 1.7e-36 157.5 188 56.9
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 6.5e-36 155.6 259 38.2
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 8.0e-34 148.7 401 31.7
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.4e-33 147.9 330 36.4
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 5.2e-33 146.0 344 33.7
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.7e-32 142.5 183 50.8
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 2.2e-31 140.6 213 51.2
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 1.1e-30 138.3 302 38.7
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 5.9e-29 132.5 172 51.2
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 9.5e-27 125.2 362 32.9
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.3e-25 120.6 97 64.9
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.4e-24 116.3 365 30.7
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.7e-24 115.9 369 31.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.0e-21 107.5 379 31.4
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 6.6e-20 102.4 132 50.0
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.1e-18 95.9 403 25.1
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 2.3e-17 94.0 172 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.4e-16 90.1 341 29.0
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.7e-15 87.8 367 28.3
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 7.8e-13 79.0 86 52.3
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 7.8e-13 79.0 121 38.0
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.3e-11 73.6 176 30.1
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 4.7e-10 69.7 57 70.2
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 8.0e-10 68.9 58 62.1
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 5.2e-09 66.2 165 33.3
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.5e-08 64.7 184 29.9
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 1.5e-08 64.7 253 31.2
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 1.3e-07 61.6 101 38.6
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.3e-07 61.6 355 25.6
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.7e-07 61.2 242 26.0
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 2.2e-07 60.8 76 47.4
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 2.2e-07 60.8 193 29.5
Eucgr.D02345 Eucalyptus grandis HOM05D008545 ORTHO05D010341 4.9e-07 59.7 71 43.7
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 6.4e-07 59.3 96 39.6
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 8.3e-07 58.9 71 47.9
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.1e-06 58.5 71 47.9
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 1.1e-06 58.5 71 46.5
BcaB07g31779 Brassica carinata HOM05D001401 ORTHO05D006368 1.1e-06 58.5 77 50.6
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.4e-06 58.2 82 45.1
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 1.4e-06 58.2 105 38.1
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 1.9e-06 57.8 103 41.7
Dinv43892 Davidia involucrata HOM05D008545 ORTHO05D010341 2.4e-06 57.4 89 39.3
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 2.4e-06 57.4 96 40.6
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 3.2e-06 57.0 97 40.2
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 4.1e-06 56.6 126 35.7
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 4.1e-06 56.6 74 45.9
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 4.1e-06 56.6 124 35.5
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 4.1e-06 56.6 71 42.3
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 5.4e-06 56.2 124 35.5
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 5.4e-06 56.2 107 37.4
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 5.4e-06 56.2 107 37.4
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 5.4e-06 56.2 82 42.7
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 5.4e-06 56.2 109 37.6
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 9.2e-06 55.5 199 29.1
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 9.2e-06 55.5 76 43.4


User provided reference genes

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