Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G030000 Theobroma cacao HOM05D007602 ORTHO05D009086 3.7e-24 114.0 55 100.0
Thecc.08G131300 Theobroma cacao HOM05D007602 ORTHO05D009086 2.6e-22 107.8 55 94.5
Gohir.A04G129200 Gossypium hirsutum HOM05D007602 ORTHO05D009086 4.5e-22 107.1 55 92.7
Gorai.012G163800 Gossypium raimondii HOM05D007602 ORTHO05D009086 4.5e-22 107.1 55 92.7
Duzib132G1115 Durio zibethinus HOM05D007602 ORTHO05D009086 5.8e-22 106.7 55 89.1
Gohir.A04G129300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 1.3e-21 105.5 55 90.9
Gohir.D04G174400 Gossypium hirsutum HOM05D007602 ORTHO05D009086 1.3e-21 105.5 55 90.9
Gorai.012G163900 Gossypium raimondii HOM05D007602 ORTHO05D009086 1.3e-21 105.5 55 90.9
Gohir.D04G174300 Gossypium hirsutum HOM05D007602 ORTHO05D009086 2.9e-21 104.4 55 90.9
Gorai.004G104500 Gossypium raimondii HOM05D007602 ORTHO05D009086 2.9e-21 104.4 55 90.9
Manes.17G097600 Manihot esculenta HOM05D007602 ORTHO05D009086 3.8e-21 104.0 55 89.1
MELO3C021943.2 Cucumis melo HOM05D007602 ORTHO05D009086 4.9e-21 103.6 55 85.5
CsaV3_2G014370 Cucumis sativus L. HOM05D007602 ORTHO05D009086 4.9e-21 103.6 55 85.5
Manes.15G146500 Manihot esculenta HOM05D007602 ORTHO05D009086 4.9e-21 103.6 55 89.1
ClCG09G017780 Citrullus lanatus HOM05D007602 ORTHO05D009086 1.4e-20 102.1 55 83.6
Sed0020423 Sechium edule HOM05D007602 ORTHO05D009086 1.9e-20 101.7 55 83.6
Oeu007232.1 Olea europaea HOM05D007602 ORTHO05D009086 5.5e-20 100.1 55 83.6
Sed0019655 Sechium edule HOM05D007602 ORTHO05D009086 9.3e-20 99.4 55 78.2
Potri.004G149200 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.2e-19 99.0 55 81.8
PGR042G2915 Punica granatum HOM05D007602 ORTHO05D009086 2.1e-19 98.2 55 80.0
Migut.B00282 Erythranthe guttata HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 81.8
Glyma.11G122300 Glycine max HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 80.0
Solyc01g109220.4 Solanum lycopersicum HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 81.8
PGSC0003DMG400025161 Solanum tuberosum HOM05D007602 ORTHO05D009086 3.5e-19 97.4 55 81.8
Cpa.g.sc62.91 Carica papaya HOM05D007602 ORTHO05D009086 4.6e-19 97.1 55 81.8
Ciclev10029767m.g Citrus clementina HOM05D007602 ORTHO05D009086 1.3e-18 95.5 55 78.2
Duzib248G0323 Durio zibethinus HOM05D007602 ORTHO05D009086 1.3e-18 95.5 55 81.8
Duzib248G0595 Durio zibethinus HOM05D007602 ORTHO05D009086 1.3e-18 95.5 55 81.8
Duzib248G1495 Durio zibethinus HOM05D007602 ORTHO05D009086 1.3e-18 95.5 55 81.8
COL.COLO4_17788 Corchorus olitorius HOM05D007602 ORTHO05D009086 1.8e-18 95.1 55 81.8
Glyma.12G047200 Glycine max HOM05D007602 ORTHO05D009086 1.8e-18 95.1 55 78.2
CAN.G322.99 Capsicum annuum HOM05D007602 ORTHO05D009086 3.0e-18 94.4 55 78.2
Cfa004963 Carpinus fangiana HOM05D007602 ORTHO05D009086 3.0e-18 94.4 55 76.4
CiPaw.05G059500 Carya illinoinensis HOM05D007602 ORTHO05D009086 3.0e-18 94.4 55 78.2
Lj3g0015904 Lotus japonicus HOM05D007602 ORTHO05D009086 3.0e-18 94.4 55 76.4
Ca_07356_v3 Cicer arietinum L. HOM05D007602 ORTHO05D009086 3.9e-18 94.0 55 78.2
TWI31G0092 Tripterygium wilfordii HOM05D007602 ORTHO05D009086 3.9e-18 94.0 55 81.8
Hma1.2p1_0584F.1_g183350 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 6.7e-18 93.2 54 77.8
Sabra04G0099200 Salix brachista HOM05D007602 ORTHO05D009086 6.7e-18 93.2 53 77.4
Phvul.011G049200 Phaseolus vulgaris HOM05D007602 ORTHO05D009086 1.5e-17 92.0 55 74.5
Potri.009G110100 Populus trichocarpa HOM05D007602 ORTHO05D009086 1.5e-17 92.0 55 72.7
Medtr4g068710 Medicago truncatula HOM05D007602 ORTHO05D009086 3.3e-17 90.9 55 74.5
Haze_02438 Corylus avellana HOM05D007602 ORTHO05D009086 4.3e-17 90.5 53 73.6
Lalb_Chr03g0025901 Lupinus albus HOM05D007602 ORTHO05D009086 4.3e-17 90.5 55 74.5
Glyma.12G082000 Glycine max HOM05D007602 ORTHO05D009086 7.4e-17 89.7 53 75.5
Lj5E203T0 Lonicera japonica HOM05D007602 ORTHO05D009086 7.4e-17 89.7 55 78.2
CANSAT25G1814 Cannabis sativa HOM05D007602 ORTHO05D009086 9.6e-17 89.4 55 76.4
Lalb_Chr01g0002891 Lupinus albus HOM05D007602 ORTHO05D009086 9.6e-17 89.4 55 72.7
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 2.1e-16 88.2 55 70.9
CARHR039420 Cardamine hirsuta HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Hma1.2p1_1353F.1_g277670 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Hma1.2p1_2724F.1_g327525 Hydrangea macrophylla HOM05D007602 ORTHO05D009086 2.8e-16 87.8 55 72.7
Carub.0001s3861 Capsella rubella HOM05D007602 ORTHO05D009086 4.8e-16 87.0 55 70.9
VMungo1127G0479 Vigna mungo HOM05D007602 ORTHO05D009086 4.8e-16 87.0 51 78.4
Prupe.8G107900 Prunus persica HOM05D007602 ORTHO05D009086 8.2e-16 86.3 55 67.3
AL1G56570 Arabidopsis lyrata HOM05D007602 ORTHO05D009086 1.8e-15 85.1 55 67.3
Nn6g32178 Nelumbo nucifera HOM05D007602 ORTHO05D009086 1.8e-15 85.1 55 74.5
AT1G49410 Arabidopsis thaliana HOM05D007602 ORTHO05D009086 2.4e-15 84.7 55 65.5
Lsat_1_v5_gn_9_109200 Lactuca sativa HOM05D007602 ORTHO05D009086 2.4e-15 84.7 54 68.5
Thhalv10011932m.g Eutrema salsugineum HOM05D007602 ORTHO05D009086 3.1e-15 84.3 55 65.5
THA.LOC104798806 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 3.1e-15 84.3 55 70.9
THA.LOC104808449 Tarenaya hassleriana HOM05D007602 ORTHO05D009086 3.1e-15 84.3 55 70.9
BcaB04g17343 Brassica carinata HOM05D007602 ORTHO05D009086 5.3e-15 83.6 55 67.3
Glyma.16G059100 Glycine max HOM05D007602 ORTHO05D009086 5.3e-15 83.6 51 74.5
Nn5g29445 Nelumbo nucifera HOM05D007602 ORTHO05D009086 1.5e-14 82.0 55 69.1
Aa31LG10G4570 Aethionema arabicum HOM05D007602 ORTHO05D009086 2.6e-14 81.3 56 67.9
BcaB02g11073 Brassica carinata HOM05D007602 ORTHO05D009086 2.6e-14 81.3 55 61.8
FAN20G1774 Fragaria x ananassa HOM05D007602 ORTHO05D009086 2.6e-14 81.3 52 69.2
A08p03960 Brassica napus HOM05D007602 ORTHO05D009086 4.5e-14 80.5 55 65.5
RcHm_v2.0_Chr6g0262021 Rosa chinensis HOM05D007602 ORTHO05D009086 7.6e-14 79.7 52 67.3
TAR381G0702 Trochodendron aralioides HOM05D007602 ORTHO05D009086 7.6e-14 79.7 55 67.3
MD10G1085000 Malus domestica HOM05D007602 ORTHO05D009086 1.0e-13 79.3 55 67.3
ECA240G4508 Erigeron canadensis HOM05D007602 ORTHO05D009086 5.0e-13 77.0 52 65.4
MD00G1073700 Malus domestica HOM05D007602 ORTHO05D009086 1.9e-12 75.1 55 65.5
Atru.chr12.1346 Acer truncatum HOM05D007602 ORTHO05D009086 2.5e-12 74.7 48 66.7
SGA_v2.0_scaffold32G13134 Striga asiatica HOM05D000790 ORTHO05D000769 4.2e-12 73.9 49 69.4
Sopen10g022680 Solanum pennellii HOM05D000002 ORTHO05D000001 5.5e-12 73.6 47 74.5
DCAR_022083 Daucus carota HOM05D007602 ORTHO05D009086 9.3e-12 72.8 55 60.0
unitig_21.g20769 Utricularia gibba HOM05D007602 ORTHO05D009086 7.9e-11 69.7 40 75.0
Sabra09G0084100 Salix brachista HOM05D007602 ORTHO05D009086 1.3e-10 68.9 44 70.5
HPP92_000754 Vanilla planifolia HOM05D001821 ORTHO05D009086 1.3e-10 68.9 55 58.2
BcaC07g37055 Brassica carinata HOM05D003421 ORTHO05D009086 3.9e-10 67.4 46 65.2
Aa31LG8G5770 Aethionema arabicum HOM05D000086 ORTHO05D008850 5.1e-10 67.0 55 58.2
MD11G1171200 Malus domestica HOM05D007602 ORTHO05D009086 4.3e-09 63.9 47 61.7
AUR62038779 Chenopodium quinoa HOM05D007602 ORTHO05D009086 7.4e-09 63.2 55 52.7
Nitab4.5_0003281g0040 Nicotiana tabacum HOM05D007602 ORTHO05D009086 1.3e-08 62.4 35 77.1
Nitab4.5_0003816g0110 Nicotiana tabacum HOM05D007602 ORTHO05D009086 1.3e-08 62.4 35 77.1
AUR62037762 Chenopodium quinoa HOM05D007602 ORTHO05D009086 1.6e-08 62.0 44 59.1
SHI05446 Sapria himalayana HOM05D007602 ORTHO05D009086 3.7e-08 60.8 36 75.0
Peaxi162Scf00016g01124 Petunia axillaris HOM05D007602 ORTHO05D009086 1.4e-07 58.9 34 73.5
Ah.01g019750 Amaranthus hybridus HOM05D007602 ORTHO05D009086 1.8e-07 58.5 40 70.0
Nn5g29444 Nelumbo nucifera HOM05D007602 ORTHO05D009086 5.3e-07 57.0 59 50.8
vmacro19447 Vaccinium macrocarpon HOM05D007602 ORTHO05D009086 2.0e-06 55.1 40 65.0
Pp3c6_6800 Physcomitrium patens HOM05D007602 ORTHO05D009086 2.6e-06 54.7 54 46.3
CSS0032371 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 4.5e-06 53.9 35 65.7
Mapoly0014s0113 Marchantia polymorpha HOM05D007602 ORTHO05D009086 1.0e-05 52.8 52 42.3
Pp3c5_22850 Physcomitrium patens HOM05D007602 ORTHO05D009086 1.0e-05 52.8 54 44.4


User provided reference genes

Program Settings