Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G029000 Theobroma cacao HOM05D008520 ORTHO05D009890 2.1e-32 141.7 71 100.0
COL.COLO4_17779 Corchorus olitorius HOM05D008520 ORTHO05D009890 2.2e-21 105.1 75 78.7
Gohir.D01G172800 Gossypium hirsutum HOM05D008520 ORTHO05D009890 8.3e-21 103.2 75 78.7
Gorai.002G214400 Gossypium raimondii HOM05D008520 ORTHO05D009890 8.3e-21 103.2 75 78.7
Gohir.A01G181700 Gossypium hirsutum HOM05D008520 ORTHO05D009890 1.1e-20 102.8 75 78.7
Gohir.D02G235600 Gossypium hirsutum HOM05D008520 ORTHO05D009890 7.3e-17 90.1 69 66.7
Gorai.005G263700 Gossypium raimondii HOM05D008520 ORTHO05D009890 7.3e-17 90.1 69 66.7
Gohir.A03G214100 Gossypium hirsutum HOM05D008520 ORTHO05D009890 1.1e-15 86.3 69 62.3
Cfa004952 Carpinus fangiana HOM05D008520 ORTHO05D009890 7.1e-12 73.6 72 59.7
Ciclev10029756m.g Citrus clementina HOM05D008520 ORTHO05D009890 7.1e-12 73.6 71 59.2
Glyma.11G123300 Glycine max HOM05D008520 ORTHO05D009890 7.1e-12 73.6 76 57.9
Phvul.011G050000 Phaseolus vulgaris HOM05D008520 ORTHO05D009890 1.2e-11 72.8 80 53.8
Potri.004G148200 Populus trichocarpa HOM05D008520 ORTHO05D009890 1.2e-11 72.8 73 61.6
Potri.009G109300 Populus trichocarpa HOM05D008520 ORTHO05D009890 1.6e-11 72.4 71 57.7
Haze_02458 Corylus avellana HOM05D008520 ORTHO05D009890 3.5e-11 71.2 75 54.7
Lj3g0002198 Lotus japonicus HOM05D008520 ORTHO05D009890 3.5e-11 71.2 76 55.3
Atru.chr5.2897 Acer truncatum HOM05D008520 ORTHO05D009890 1.0e-10 69.7 76 57.9
arahy.Tifrunner.gnm1.ann1.4L7A6H Arachis hypogaea HOM05D008520 ORTHO05D009890 1.0e-10 69.7 77 55.8
arahy.Tifrunner.gnm1.ann1.H0FE8D Arachis hypogaea HOM05D008520 ORTHO05D009890 1.0e-10 69.7 77 55.8
Ciclev10029754m.g Citrus clementina HOM05D008520 ORTHO05D009890 3.0e-10 68.2 69 58.0
FAN05G4777 Fragaria x ananassa HOM05D008520 ORTHO05D009890 3.9e-10 67.8 92 45.7
FAN15G0381 Fragaria x ananassa HOM05D008520 ORTHO05D009890 3.9e-10 67.8 92 45.7
FAN20G0555 Fragaria x ananassa HOM05D008520 ORTHO05D009890 3.9e-10 67.8 92 45.7
FAN24G0814 Fragaria x ananassa HOM05D008520 ORTHO05D009890 3.9e-10 67.8 92 50.0
Glyma.12G048000 Glycine max HOM05D008520 ORTHO05D009890 3.9e-10 67.8 77 50.6
Manes.15G145900 Manihot esculenta HOM05D008520 ORTHO05D009890 5.1e-10 67.4 73 53.4
CSS0029741 Camellia sinensis var. sinensis HOM05D008520 ORTHO05D009890 6.6e-10 67.0 78 47.4
Lalb_Chr01g0002971 Lupinus albus HOM05D008520 ORTHO05D009890 6.6e-10 67.0 71 52.1
Atru.chr5.2895 Acer truncatum HOM05D008520 ORTHO05D009890 1.1e-09 66.2 83 50.6
Haze_02459 Corylus avellana HOM05D008520 ORTHO05D009890 1.1e-09 66.2 74 54.1
Medtr4g068560 Medicago truncatula HOM05D008520 ORTHO05D009890 1.1e-09 66.2 75 52.0
QL11p039275 Quercus lobata HOM05D008520 ORTHO05D009890 1.1e-09 66.2 72 50.0
Prupe.8G111600 Prunus persica HOM05D008520 ORTHO05D009890 2.5e-09 65.1 84 48.8
Prupe.8G112200 Prunus persica HOM05D008520 ORTHO05D009890 2.5e-09 65.1 84 48.8
RcHm_v2.0_Chr6g0260831 Rosa chinensis HOM05D008520 ORTHO05D009890 3.3e-09 64.7 91 49.5
Manes.17G096900 Manihot esculenta HOM05D012043 ORTHO05D009890 4.3e-09 64.3 70 54.3
Eucgr.G00506 Eucalyptus grandis HOM05D012043 ORTHO05D009890 9.5e-09 63.2 76 46.1
vmacro02158 Vaccinium macrocarpon HOM05D008520 ORTHO05D009890 9.5e-09 63.2 90 45.6
Cfa004950 Carpinus fangiana HOM05D008520 ORTHO05D009890 2.1e-08 62.0 72 55.6
FvH4_2g07390 Fragaria vesca HOM05D008520 ORTHO05D009890 3.6e-08 61.2 86 48.8
Glyma.07G163300 Glycine max HOM05D008520 ORTHO05D009890 3.6e-08 61.2 77 51.9
CARHR106280 Cardamine hirsuta HOM05D011423 ORTHO05D009890 1.1e-07 59.7 71 43.7
A03p45660 Brassica napus HOM05D011423 ORTHO05D009890 1.4e-07 59.3 74 44.6
BraA03t13698Z Brassica rapa HOM05D011423 ORTHO05D009890 1.4e-07 59.3 74 44.6
Eucgr.I01226 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.4e-07 59.3 74 48.6
Eucgr.L01741 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.4e-07 59.3 74 48.6
Eucgr.L01746 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.4e-07 59.3 74 48.6
Sabra04G0098300 Salix brachista HOM05D012043 ORTHO05D009890 1.4e-07 59.3 66 59.1
Eucgr.I01222 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.8e-07 58.9 74 47.3
Prupe.8G110900 Prunus persica HOM05D008520 ORTHO05D009890 1.8e-07 58.9 85 45.9
Prupe.8G111800 Prunus persica HOM05D008520 ORTHO05D009890 1.8e-07 58.9 84 45.2
AL3G47790 Arabidopsis lyrata HOM05D011423 ORTHO05D009890 2.4e-07 58.5 77 40.3
Eucgr.L01747 Eucalyptus grandis HOM05D012043 ORTHO05D009890 2.4e-07 58.5 74 47.3
BcaB08g34619 Brassica carinata HOM05D011423 ORTHO05D009890 5.2e-07 57.4 74 41.9
C03p56720 Brassica napus HOM05D011423 ORTHO05D009890 5.2e-07 57.4 75 44.0
BolC3t17956H Brassica oleracea HOM05D011423 ORTHO05D009890 5.2e-07 57.4 75 44.0
AT2G15960 Arabidopsis thaliana HOM05D011423 ORTHO05D009890 6.8e-07 57.0 72 45.8
Carub.0003s2983 Capsella rubella HOM05D011423 ORTHO05D009890 6.8e-07 57.0 79 39.2
Eucgr.G01536 Eucalyptus grandis HOM05D012043 ORTHO05D009890 6.8e-07 57.0 76 44.7
Medtr1g034290 Medicago truncatula HOM05D008520 ORTHO05D009890 6.8e-07 57.0 71 47.9
Eucgr.L03689 Eucalyptus grandis HOM05D012043 ORTHO05D009890 8.9e-07 56.6 67 47.8
Eucgr.G01538 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.2e-06 56.2 78 44.9
Prupe.8G112000 Prunus persica HOM05D008520 ORTHO05D009890 1.2e-06 56.2 85 44.7
Eucgr.G00500 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.5e-06 55.8 78 43.6
Eucgr.G00503 Eucalyptus grandis HOM05D012043 ORTHO05D009890 1.5e-06 55.8 78 43.6
Sp3g29250 Schrenkiella parvula HOM05D011423 ORTHO05D009890 1.5e-06 55.8 77 39.0
TAR628G1249 Trochodendron aralioides HOM05D008520 ORTHO05D009890 1.5e-06 55.8 81 45.7
Prupe.8G111400 Prunus persica HOM05D008520 ORTHO05D009890 2.0e-06 55.5 85 44.7
Glyma.20G008300 Glycine max HOM05D008520 ORTHO05D009890 3.4e-06 54.7 71 50.7
Lj2g0022497 Lotus japonicus HOM05D008520 ORTHO05D009890 3.4e-06 54.7 71 50.7
Thhalv10022948m.g Eutrema salsugineum HOM05D011423 ORTHO05D009890 5.8e-06 53.9 77 37.7
CiPaw.06G139100 Carya illinoinensis HOM05D012043 ORTHO05D009890 7.6e-06 53.5 72 45.8
TPR.G10234 Trifolium pratense HOM05D011423 ORTHO05D009890 7.6e-06 53.5 76 47.4
Ca_12478_v3 Cicer arietinum L. HOM05D008520 ORTHO05D009890 9.9e-06 53.1 71 49.3
Sc18g0004830 Simmondsia chinensis HOM05D008520 ORTHO05D009890 9.9e-06 53.1 79 39.2


User provided reference genes

Program Settings