Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G025300 Theobroma cacao HOM05D007992 ORTHO05D010086 3.3e-16 87.8 64 100.0
Duzib132G0994 Durio zibethinus HOM05D007992 ORTHO05D010086 3.6e-15 84.3 64 96.9
Gohir.D04G175400 Gossypium hirsutum HOM05D007992 ORTHO05D010086 2.3e-14 81.6 64 92.2
Gorai.012G166700 Gossypium raimondii HOM05D007992 ORTHO05D010086 2.3e-14 81.6 64 92.2
Gohir.A04G130200 Gossypium hirsutum HOM05D007992 ORTHO05D010086 6.8e-14 80.1 64 92.2
THA.LOC104820254 Tarenaya hassleriana HOM05D007992 ORTHO05D010086 6.8e-14 80.1 64 62.5
AT1G09794 Arabidopsis thaliana HOM05D007992 ORTHO05D010086 8.9e-14 79.7 64 62.5
Carub.0001s0914 Capsella rubella HOM05D007992 ORTHO05D010086 8.9e-14 79.7 64 62.5
CARHR009770 Cardamine hirsuta HOM05D007992 ORTHO05D010086 8.9e-14 79.7 64 62.5
Thhalv10009288m.g Eutrema salsugineum HOM05D007992 ORTHO05D010086 8.9e-14 79.7 64 62.5
Sp1g08390 Schrenkiella parvula HOM05D007992 ORTHO05D010086 8.9e-14 79.7 64 82.8
Manes.10G120300 Manihot esculenta HOM05D007992 ORTHO05D010086 4.4e-13 77.4 64 62.5
Atru.chr6.758 Acer truncatum HOM05D007992 ORTHO05D010086 5.8e-13 77.0 64 89.1
Aa31LG1G5180 Aethionema arabicum HOM05D007992 ORTHO05D010086 7.5e-13 76.6 64 60.9
Sed0016814 Sechium edule HOM05D007992 ORTHO05D010086 7.5e-13 76.6 63 61.9
C05p07870 Brassica napus HOM05D007992 ORTHO05D010086 9.8e-13 76.3 64 62.5
BolC5t29538H Brassica oleracea HOM05D007992 ORTHO05D010086 9.8e-13 76.3 64 62.5
PGR142G0328 Punica granatum HOM05D007992 ORTHO05D010086 1.3e-12 75.9 64 60.9
Migut.B00791 Erythranthe guttata HOM05D007992 ORTHO05D010086 2.9e-12 74.7 64 59.4
A06p06460 Brassica napus HOM05D007992 ORTHO05D010086 3.7e-12 74.3 64 60.9
BraA06t23857Z Brassica rapa HOM05D007992 ORTHO05D010086 3.7e-12 74.3 64 60.9
arahy.Tifrunner.gnm1.ann1.5LAZ71 Arachis hypogaea HOM05D007992 ORTHO05D010086 6.4e-12 73.6 64 60.9
arahy.Tifrunner.gnm1.ann1.UKT1PL Arachis hypogaea HOM05D007992 ORTHO05D010086 6.4e-12 73.6 64 60.9
CiPaw.05G051500 Carya illinoinensis HOM05D007992 ORTHO05D010086 6.4e-12 73.6 64 59.4
GSVIVG01023280001 Vitis vinifera HOM05D007992 ORTHO05D010086 6.4e-12 73.6 64 60.9
CAN.G798.45 Capsicum annuum HOM05D007992 ORTHO05D010086 8.3e-12 73.2 63 60.3
Nn5g27747 Nelumbo nucifera HOM05D007992 ORTHO05D010086 1.1e-11 72.8 60 71.7
Phvul.003G074700 Phaseolus vulgaris HOM05D007992 ORTHO05D010086 1.1e-11 72.8 63 60.3
HanXRQChr07g0187511 Helianthus annuus HOM05D007992 ORTHO05D010086 1.9e-11 72.0 64 59.4
Lsat_1_v5_gn_7_79260 Lactuca sativa HOM05D007992 ORTHO05D010086 1.9e-11 72.0 64 59.4
Potri.003G009800 Populus trichocarpa HOM05D007992 ORTHO05D010086 1.9e-11 72.0 64 59.4
Nitab4.5_0000948g0130 Nicotiana tabacum HOM05D007992 ORTHO05D010086 2.4e-11 71.6 63 58.7
Peaxi162Scf00011g00937 Petunia axillaris HOM05D007992 ORTHO05D010086 2.4e-11 71.6 63 58.7
Lj4g0012187 Lotus japonicus HOM05D007992 ORTHO05D010086 3.2e-11 71.2 64 59.4
Oeu045939.1 Olea europaea HOM05D007992 ORTHO05D010086 4.1e-11 70.9 64 56.2
QL02p099856 Quercus lobata HOM05D007992 ORTHO05D010086 5.4e-11 70.5 63 57.1
QL93p0310_0002 Quercus lobata HOM05D007992 ORTHO05D010086 5.4e-11 70.5 63 57.1
Glyma.17G000900 Glycine max HOM05D007992 ORTHO05D010086 7.0e-11 70.1 36 88.9
Medtr4g134900 Medicago truncatula HOM05D007992 ORTHO05D010086 7.0e-11 70.1 63 57.1
Nitab4.5_0002596g0010 Nicotiana tabacum HOM05D007992 ORTHO05D010086 7.0e-11 70.1 63 57.1
Cc02_g22280 Coffea canephora HOM05D007992 ORTHO05D010086 9.2e-11 69.7 64 56.2
MELO3C031671.2 Cucumis melo HOM05D007992 ORTHO05D010086 9.2e-11 69.7 61 57.4
Eucgr.I02752 Eucalyptus grandis HOM05D007992 ORTHO05D010086 1.6e-10 68.9 63 54.0
MBI09_g08443_MAGBIO Magnolia biondii HOM05D007992 ORTHO05D010086 2.7e-10 68.2 36 83.3
CsaV3_3G019300 Cucumis sativus L. HOM05D007992 ORTHO05D010086 1.0e-09 66.2 61 54.1
Aqoxy6G00119 Aquilegia oxysepala HOM05D007992 ORTHO05D010086 1.7e-09 65.5 65 69.2
MD15G1432800 Malus domestica HOM05D007992 ORTHO05D010086 1.7e-09 65.5 60 58.3
DCAR_025353 Daucus carota HOM05D007992 ORTHO05D010086 3.0e-09 64.7 58 55.2
TWI59G0747 Tripterygium wilfordii HOM05D007992 ORTHO05D010086 3.0e-09 64.7 64 54.7
PSO782G2589 Papaver somniferum HOM05D007992 ORTHO05D010086 3.9e-09 64.3 65 55.4
Zm00001eb138500 Zea mays HOM05D007992 ORTHO05D010086 3.9e-09 64.3 64 53.1
SalBow7G0224 Salvia bowleyana HOM05D007992 ORTHO05D010086 8.6e-09 63.2 72 50.0
CANSAT54G2040 Cannabis sativa HOM05D007992 ORTHO05D010086 1.5e-08 62.4 65 53.8
unitig_26.g9026 Utricularia gibba HOM05D007992 ORTHO05D010086 1.9e-08 62.0 29 93.1
CDE02G3423 Ceratophyllum demersum HOM05D007992 ORTHO05D010086 2.5e-08 61.6 35 74.3
MD08G1240200 Malus domestica HOM05D007992 ORTHO05D010086 4.3e-08 60.8 56 73.2
Prupe.1G576700 Prunus persica HOM05D007992 ORTHO05D010086 4.3e-08 60.8 65 56.9
EL10Ac1g00780 Beta vulgaris HOM05D007992 ORTHO05D010086 5.6e-08 60.5 34 79.4
TPR.G17560 Trifolium pratense HOM05D007992 ORTHO05D010086 5.6e-08 60.5 31 87.1
Os12g0182600 Oryza sativa ssp. japonica HOM05D007992 ORTHO05D010086 7.3e-08 60.1 64 50.0
AUR62023424 Chenopodium quinoa HOM05D007992 ORTHO05D010086 9.5e-08 59.7 34 76.5
PGSC0003DMG400024927 Solanum tuberosum HOM05D007992 ORTHO05D010086 1.2e-07 59.3 36 75.0
RcHm_v2.0_Chr7g0220841 Rosa chinensis HOM05D007992 ORTHO05D010086 2.8e-07 58.2 58 53.4
SGA_v2.0_scaffold272G46362 Striga asiatica HOM05D007992 ORTHO05D010086 3.6e-07 57.8 29 86.2
vmacro01727 Vaccinium macrocarpon HOM05D007992 ORTHO05D010086 3.6e-07 57.8 70 48.6
CSS0028556 Camellia sinensis var. sinensis HOM05D007992 ORTHO05D010086 8.1e-07 56.6 64 50.0
Migut.B00795 Erythranthe guttata HOM05D007992 ORTHO05D010086 1.1e-06 56.2 29 79.3


User provided reference genes

Program Settings