Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 2.5e-181 638.6 316 100.0
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 7.4e-154 547.4 293 93.5
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 3.3e-117 425.6 293 73.7
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 9.8e-114 414.1 293 74.1
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 2.2e-113 412.9 279 76.0
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 3.4e-106 389.0 278 73.0
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 1.4e-96 357.1 307 63.8
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 1.6e-92 343.6 278 67.6
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 1.9e-64 250.4 297 51.5
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 7.1e-64 248.4 297 50.8
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.1e-62 242.3 299 52.2
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 9.0e-51 204.9 276 47.8
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 7.2e-48 195.3 275 45.8
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 1.2e-47 194.5 305 43.9
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.1e-45 188.0 295 44.7
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 1.5e-45 187.6 289 42.9
Thecc.02G022900 Theobroma cacao HOM05D002599 ORTHO05D012670 1.3e-44 184.5 229 50.7
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 8.2e-44 181.8 295 45.1
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 3.1e-43 179.9 295 44.7
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 4.1e-43 179.5 286 44.4
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 1.5e-42 177.6 289 44.3
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.1e-40 171.4 290 43.1
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 2.5e-40 170.2 294 43.5
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.6e-39 167.5 196 50.5
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 1.6e-39 167.5 196 50.5
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.6e-39 166.4 196 50.5
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.3e-37 159.8 279 43.0
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-31 139.8 129 54.3
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-30 137.1 105 61.0
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.8e-30 135.2 104 60.6
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 5.7e-29 132.5 106 61.3
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-27 127.9 111 55.9
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 1.8e-27 127.5 107 57.9
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-27 126.3 102 56.9
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 7.0e-27 125.6 102 57.8
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 7.7e-26 122.1 111 52.3
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 6.5e-25 119.0 111 51.4
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 7.2e-24 115.5 127 46.5
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.4e-24 115.2 303 33.7
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-23 114.0 102 54.9
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 4.7e-23 112.8 294 34.0
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-23 112.5 102 52.9
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-22 111.3 102 52.9
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 1.4e-22 111.3 127 45.7
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 4.0e-22 109.8 127 45.7
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.6e-21 107.1 133 45.1
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 3.7e-20 103.2 135 45.2
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 1.1e-19 101.7 138 44.2
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 1.8e-19 100.9 95 58.9
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 3.1e-19 100.1 115 47.0
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 1.6e-18 97.8 138 42.0
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 1.6e-18 97.8 97 49.5
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 2.0e-18 97.4 137 42.3
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.5e-17 92.4 102 43.1
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.2e-16 89.7 103 45.6
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.2e-16 89.0 101 44.6
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-15 87.8 103 44.7
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-15 87.0 100 44.0
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 4.7e-15 86.3 109 39.4
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-15 85.9 125 40.0
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 8.0e-15 85.5 96 46.9
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.4e-14 84.7 87 46.0
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-14 84.3 119 38.7
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-14 84.0 103 43.7
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.3e-14 84.0 102 38.2
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-14 83.6 103 44.7
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.0e-14 83.6 113 42.5
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.0e-14 83.2 102 43.1
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 5.2e-14 82.8 97 44.3
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 5.2e-14 82.8 100 41.0
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-14 82.0 102 37.3
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-14 82.0 152 33.6
Thecc.01G178700 Theobroma cacao HOM05D002599 ORTHO05D409667 1.2e-13 81.6 77 62.3
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-13 80.9 102 44.1
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 3.4e-13 80.1 105 41.9
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.4e-13 79.7 104 40.4
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-13 79.7 102 37.3
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.7e-13 79.3 103 43.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 7.5e-13 79.0 102 36.3
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 7.5e-13 79.0 101 39.6
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.8e-13 78.6 133 36.1
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.8e-13 78.6 66 56.1
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.8e-13 78.6 102 42.2
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.8e-13 78.6 101 39.6
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 9.8e-13 78.6 105 41.9
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 9.8e-13 78.6 90 41.1
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.3e-12 78.2 107 40.2
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-12 78.2 104 40.4
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-12 78.2 103 38.8
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-12 78.2 104 39.4
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-12 78.2 102 43.1
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-12 77.4 111 41.4
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-12 77.4 101 43.6
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-12 77.0 100 41.0
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 2.8e-12 77.0 90 40.0
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-12 77.0 103 38.8
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.9e-12 76.3 111 41.4
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 6.3e-12 75.9 102 37.3
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-11 75.1 103 44.7
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-11 75.1 106 35.8
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-11 75.1 101 37.6
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-11 74.7 102 34.3
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 2.4e-11 73.9 101 37.6
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.1e-11 73.6 105 42.9
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 3.1e-11 73.6 101 36.6
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.1e-11 73.6 103 39.8
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 3.1e-11 73.6 126 34.1
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.1e-11 73.2 91 39.6
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 4.1e-11 73.2 104 31.7
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.4e-11 72.8 105 35.2
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.0e-11 72.4 104 36.5
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.0e-11 72.4 104 36.5
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.0e-11 72.4 105 37.1
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.0e-11 72.4 101 41.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.1e-11 72.0 103 40.8
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.2e-10 71.6 104 41.3
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 1.6e-10 71.2 107 39.3
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 1.6e-10 71.2 105 41.0
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-10 70.1 105 40.0
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 3.5e-10 70.1 105 41.0
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.5e-10 69.7 105 37.1
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.5e-10 69.7 108 37.0
COL.COLO4_17744 Corchorus olitorius HOM05D002599 ORTHO05D158901 5.9e-10 69.3 55 65.5
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 5.9e-10 69.3 162 31.5
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 5.9e-10 69.3 103 34.0
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 5.9e-10 69.3 101 31.7
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.7e-10 68.9 93 38.7
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-09 67.8 102 33.3
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-09 67.8 101 36.6
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.9e-09 67.0 103 36.9
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.9e-09 67.0 100 34.0
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.9e-09 67.0 100 34.0
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.9e-09 67.0 104 37.5
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.8e-09 66.6 103 36.9
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.8e-09 66.6 103 36.9
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 3.8e-09 66.6 137 33.6
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 3.8e-09 66.6 102 36.3
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.0e-09 66.2 103 39.8
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 8.6e-09 65.5 84 44.0
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 1.1e-08 65.1 101 29.7
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.9e-08 64.3 105 38.1
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-08 64.3 100 33.0
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 1.9e-08 64.3 161 31.1
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 2.5e-08 63.9 106 30.2
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.5e-08 63.9 105 32.4
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 4.2e-08 63.2 105 38.1
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 5.6e-08 62.8 135 31.1
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.2e-08 62.4 99 39.4
Manes.07G021600 Manihot esculenta HOM05D002599 ORTHO05D001895 9.5e-08 62.0 105 28.6
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.2e-07 61.6 100 37.0
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-07 61.2 113 35.4
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-07 61.2 102 35.3
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.6e-07 61.2 102 35.3
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-07 60.5 96 38.5
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 2.8e-07 60.5 100 36.0
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 4.7e-07 59.7 73 41.1
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.0e-07 58.9 113 34.5
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.0e-07 58.9 102 32.4
Manes.10G124912 Manihot esculenta HOM05D002599 ORTHO05D001895 1.0e-06 58.5 110 28.2
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-06 57.8 112 33.9
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 1.8e-06 57.8 103 32.0
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 2.3e-06 57.4 102 30.4
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 2.3e-06 57.4 102 30.4
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 2.3e-06 57.4 110 32.7
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-06 57.4 102 35.3
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-06 57.4 102 35.3
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.3e-06 57.4 102 35.3
Manes.07G021700 Manihot esculenta HOM05D002599 ORTHO05D001895 2.3e-06 57.4 103 27.2
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.2e-06 56.2 104 28.8
Gohir.A12G027233 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.2e-06 56.2 104 31.7
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 8.9e-06 55.5 98 36.7


User provided reference genes

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