Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 4.1e-170 601.3 296 100.0
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 4.8e-155 551.2 293 93.5
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 2.3e-120 436.0 292 75.0
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 1.0e-117 427.2 292 75.3
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 3.1e-117 425.6 278 78.1
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 1.7e-107 393.3 278 73.4
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 2.0e-100 369.8 320 64.1
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 6.9e-93 344.7 278 67.3
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 6.5e-67 258.5 297 52.9
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.4e-66 257.3 297 52.2
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 9.6e-63 244.6 298 52.7
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 1.7e-51 207.2 310 46.1
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 7.2e-50 201.8 278 47.8
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.1e-47 194.5 274 45.3
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 4.1e-45 186.0 287 44.3
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 6.9e-45 185.3 288 42.4
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.9e-45 185.3 291 45.0
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 4.5e-44 182.6 287 44.6
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.0e-43 181.4 295 44.4
Thecc.02G022900 Theobroma cacao HOM05D002599 ORTHO05D012670 1.7e-43 180.6 204 55.4
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 2.2e-43 180.3 295 44.1
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 4.2e-42 176.0 292 44.2
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 4.7e-41 172.6 293 42.3
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.7e-40 168.7 222 45.9
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.5e-39 167.5 222 45.5
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 1.5e-39 167.5 222 45.5
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.3e-37 159.1 279 43.4
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-31 140.2 109 58.7
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-31 139.0 103 62.1
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-30 137.1 102 61.8
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.8e-30 136.0 107 59.8
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 8.2e-30 135.2 103 59.2
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 7.0e-29 132.1 107 58.9
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-28 130.6 122 50.8
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 2.7e-28 130.2 106 59.4
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 5.9e-28 129.0 107 55.1
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 5.0e-27 125.9 107 54.2
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.2e-26 122.9 292 33.9
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 9.4e-26 121.7 292 33.9
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 4.7e-25 119.4 122 48.4
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.0e-25 118.6 122 49.2
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-24 117.1 99 54.5
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 5.2e-24 115.9 290 33.4
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 8.8e-24 115.2 122 47.5
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 2.6e-23 113.6 122 47.5
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-23 113.2 122 46.7
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 2.4e-21 107.1 134 44.0
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 2.0e-20 104.0 95 61.1
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.0e-20 104.0 153 39.2
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 3.5e-20 103.2 134 41.8
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 7.7e-20 102.1 133 41.4
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 6.5e-19 99.0 115 46.1
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-18 98.2 97 48.5
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-17 93.2 118 40.7
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 8.0e-17 92.0 89 48.3
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 2.3e-16 90.5 124 37.9
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.0e-16 89.7 102 42.2
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.2e-16 89.4 103 37.9
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.2e-16 89.4 123 37.4
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.8e-16 88.6 86 46.5
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.8e-16 88.6 103 43.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-15 87.8 103 37.9
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-15 87.0 103 37.9
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.4e-15 86.3 101 42.6
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.4e-15 86.3 103 42.7
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 5.7e-15 85.9 113 43.4
Thecc.01G178700 Theobroma cacao HOM05D002599 ORTHO05D409667 9.8e-15 85.1 76 63.2
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-14 84.7 102 43.1
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-14 84.3 100 42.0
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-14 84.3 101 39.6
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-14 84.3 103 35.9
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 2.2e-14 84.0 100 41.0
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 2.8e-14 83.6 97 43.3
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.7e-14 83.2 103 39.8
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.3e-14 82.4 103 42.7
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.3e-14 82.4 103 41.7
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.3e-14 82.4 103 36.9
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-13 80.5 132 35.6
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.1e-13 80.1 100 43.0
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.1e-13 80.1 101 39.6
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 3.1e-13 80.1 105 41.9
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 3.1e-13 80.1 105 41.9
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.1e-13 79.7 110 40.9
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-13 79.7 102 41.2
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-13 79.7 101 43.6
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 4.1e-13 79.7 103 36.9
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.2e-13 78.6 110 40.9
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.2e-13 78.6 62 56.5
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 9.2e-13 78.6 90 41.1
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 9.2e-13 78.6 106 36.8
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-12 78.2 129 38.8
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-12 78.2 102 42.2
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-12 77.4 105 37.1
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.0e-12 77.4 105 37.1
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-12 77.4 107 38.3
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-12 77.4 103 43.7
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-12 77.4 104 32.7
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-12 77.4 101 38.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.7e-12 77.0 103 42.7
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 2.7e-12 77.0 104 36.5
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 2.7e-12 77.0 90 40.0
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.5e-12 76.6 108 38.9
COL.COLO4_17744 Corchorus olitorius HOM05D002599 ORTHO05D158901 3.5e-12 76.6 56 67.9
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.5e-12 76.6 102 42.2
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.5e-12 76.3 102 38.2
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 4.5e-12 76.3 101 38.6
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.9e-12 75.9 85 42.4
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.9e-12 75.9 129 37.2
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-12 75.9 103 37.9
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-12 75.9 102 39.2
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 1.0e-11 75.1 160 31.9
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-11 75.1 141 32.6
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-11 75.1 101 37.6
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-11 74.7 102 38.2
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-11 74.7 102 37.3
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.7e-11 74.3 129 35.7
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.3e-11 73.9 106 37.7
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 2.3e-11 73.9 106 40.6
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-11 73.9 101 41.6
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.3e-11 73.9 106 38.7
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 5.0e-11 72.8 134 34.3
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 6.6e-11 72.4 102 35.3
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.6e-11 72.0 105 35.2
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 1.9e-10 70.9 158 31.6
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 2.5e-10 70.5 105 31.4
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 2.5e-10 70.5 101 32.7
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.3e-10 70.1 104 38.5
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 5.6e-10 69.3 108 35.2
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 5.6e-10 69.3 104 38.5
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.5e-10 68.6 101 40.6
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.5e-10 68.6 100 37.0
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 9.5e-10 68.6 100 37.0
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 9.5e-10 68.6 102 36.3
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 9.5e-10 68.6 106 38.7
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 2.1e-09 67.4 106 38.7
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 2.1e-09 67.4 136 32.4
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 2.8e-09 67.0 103 33.0
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-09 67.0 93 37.6
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.6e-09 66.6 103 39.8
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.7e-09 66.2 103 35.9
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 4.7e-09 66.2 101 30.7
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-09 65.9 103 35.9
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.1e-09 65.9 103 35.9
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.0e-09 65.5 103 35.0
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.0e-09 65.5 105 37.1
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 8.0e-09 65.5 87 42.5
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 1.4e-08 64.7 100 37.0
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-08 64.3 100 33.0
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.8e-08 64.3 100 33.0
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 4.0e-08 63.2 138 31.9
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.0e-08 63.2 93 33.3
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.2e-08 62.8 105 35.2
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.2e-08 62.8 105 36.2
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.2e-08 62.8 103 33.0
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.8e-08 62.4 105 32.4
Ciclev10003967m.g Citrus clementina HOM05D022543 ORTHO05D001895 8.9e-08 62.0 107 30.8
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.9e-08 62.0 103 32.0
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 8.9e-08 62.0 104 36.5
Manes.07G021600 Manihot esculenta HOM05D002599 ORTHO05D001895 1.2e-07 61.6 103 31.1
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.5e-07 61.2 103 35.9
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-07 60.8 109 33.0
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 2.6e-07 60.5 103 33.0
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 3.4e-07 60.1 113 29.2
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 3.4e-07 60.1 113 29.2
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.4e-07 59.7 104 28.8
Gohir.A12G027233 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-07 59.3 105 31.4
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 7.5e-07 58.9 108 32.4
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 9.8e-07 58.5 100 30.0
Atru.chr2.68 Acer truncatum HOM05D002599 ORTHO05D001895 2.9e-06 57.0 105 31.4
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.9e-06 57.0 105 26.7
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.9e-06 57.0 94 38.3
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.9e-06 56.2 101 34.7
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.9e-06 56.2 101 34.7
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.9e-06 56.2 101 34.7
Gohir.D12G026733 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.4e-06 55.8 105 30.5
Manes.07G021700 Manihot esculenta HOM05D002599 ORTHO05D001895 6.4e-06 55.8 103 29.1
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.4e-06 55.8 103 30.1
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.3e-06 55.5 105 30.5


User provided reference genes

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