Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 1.4e-165 586.3 303 100.0
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 1.4e-88 330.5 221 75.6
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 1.3e-86 323.9 333 57.1
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 3.0e-35 153.3 135 51.9
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 6.7e-35 152.1 130 50.8
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 1.5e-34 151.0 133 50.4
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 2.5e-34 150.2 133 49.6
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 5.6e-34 149.1 135 47.4
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 9.6e-34 148.3 128 52.3
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.3e-33 147.9 132 49.2
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.3e-33 147.9 130 52.3
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 2.1e-33 147.1 157 43.9
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.1e-32 144.8 126 51.6
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 1.1e-32 144.8 189 41.8
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 9.0e-32 141.7 208 39.4
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 9.0e-32 141.7 209 39.7
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.5e-31 141.0 130 50.8
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 2.6e-31 140.2 145 48.3
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 1.3e-30 137.9 135 46.7
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 1.3e-30 137.9 135 46.7
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 1.3e-30 137.9 134 49.3
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 2.2e-30 137.1 139 43.9
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 2.9e-30 136.7 134 48.5
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 3.8e-30 136.3 159 40.9
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 3.8e-30 136.3 128 48.4
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 8.4e-30 135.2 137 46.0
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 1.4e-29 134.4 133 48.1
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 1.9e-29 134.0 146 43.2
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 1.9e-29 134.0 146 43.2
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 3.2e-29 133.3 138 44.2
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 4.2e-29 132.9 135 44.4
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 5.5e-29 132.5 130 46.9
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 1.2e-28 131.3 128 45.3
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 1.2e-28 131.3 135 42.2
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 1.6e-28 131.0 135 45.2
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 2.1e-28 130.6 135 45.2
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-27 127.5 155 41.9
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 3.9e-27 126.3 156 37.8
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 5.1e-27 125.9 132 44.7
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 1.1e-26 124.8 139 44.6
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 2.2e-25 120.6 120 45.0
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 2.2e-25 120.6 155 38.7
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 2.8e-25 120.2 169 37.3
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 8.2e-25 118.6 132 42.4
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 8.2e-25 118.6 126 42.1
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 4.1e-24 116.3 126 41.3
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 5.3e-24 115.9 134 44.0
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 5.9e-23 112.5 180 40.0
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 1.0e-22 111.7 147 40.1
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 2.9e-22 110.2 143 40.6
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 2.9e-22 110.2 143 40.6
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.4e-21 107.8 92 50.0
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 2.5e-21 107.1 149 42.3
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 4.2e-21 106.3 149 41.6
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 2.1e-20 104.0 149 40.9
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 2.1e-20 104.0 149 40.9
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.7e-20 103.6 103 47.6
BcaB01g05192 Brassica carinata HOM05D000005 ORTHO05D018617 3.6e-20 103.2 135 41.5
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 3.6e-20 103.2 149 40.9
BolC3t13513H Brassica oleracea HOM05D000005 ORTHO05D018617 3.6e-20 103.2 150 39.3
BraA08t32207Z Brassica rapa HOM05D000005 ORTHO05D008529 6.1e-20 102.4 149 39.6
C03p10340 Brassica napus HOM05D000005 ORTHO05D018617 1.0e-19 101.7 135 41.5
BraA03t10209Z Brassica rapa HOM05D000005 ORTHO05D018617 1.0e-19 101.7 135 41.5
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 1.0e-19 101.7 154 35.7
Ciclev10003101m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.8e-19 100.9 138 37.7
Manes.07G116400 Manihot esculenta HOM05D007656 ORTHO05D008529 1.8e-19 100.9 127 40.2
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 3.0e-19 100.1 118 41.5
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 3.0e-19 100.1 127 38.6
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 3.9e-19 99.8 151 35.8
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 3.9e-19 99.8 151 35.8
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 8.8e-19 98.6 118 40.7
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 1.1e-18 98.2 147 36.7
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 1.1e-18 98.2 118 42.4
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 1.9e-18 97.4 167 35.9
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.3e-18 96.7 106 42.5
Ciclev10003595m.g Citrus clementina HOM05D007656 ORTHO05D008529 5.7e-18 95.9 84 46.4
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 5.7e-18 95.9 127 37.0
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 2.2e-17 94.0 136 36.0
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 2.2e-17 94.0 129 37.2
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 3.7e-17 93.2 133 39.1
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 6.3e-17 92.4 115 41.7
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 6.3e-17 92.4 159 34.0
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 8.2e-17 92.0 137 37.2
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 1.1e-16 91.7 138 37.0
Sp5g20860 Schrenkiella parvula HOM05D000005 ORTHO05D000294 2.4e-16 90.5 141 35.5
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 3.1e-16 90.1 133 36.1
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 4.1e-16 89.7 124 34.7
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 6.9e-16 89.0 128 37.5
Ciclev10004000m.g Citrus clementina HOM05D007656 ORTHO05D008529 9.1e-16 88.6 68 52.9
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 9.1e-16 88.6 133 36.1
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 1.2e-15 88.2 142 32.4
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 1.5e-15 87.8 192 31.8
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 1.3e-14 84.7 132 31.8
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 5.0e-14 82.8 133 35.3
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 5.0e-14 82.8 134 32.8
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 5.0e-14 82.8 133 33.1
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 8.5e-14 82.0 113 38.1
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 8.5e-14 82.0 125 37.6
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.1e-13 81.6 212 26.9
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 1.4e-13 81.3 169 29.6
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 1.4e-13 81.3 129 34.1
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 1.9e-13 80.9 100 42.0
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 2.5e-13 80.5 134 29.9
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 5.5e-13 79.3 146 28.8
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 7.2e-13 79.0 134 32.8
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 9.4e-13 78.6 125 36.8
Thhalv10015989m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 4.7e-12 76.3 136 36.0
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 4.7e-12 76.3 78 46.2
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 7.9e-12 75.5 138 34.1
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 1.4e-11 74.7 141 30.5
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 1.4e-11 74.7 113 36.3
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 1.4e-11 74.7 139 31.7
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 1.8e-11 74.3 106 35.8
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 1.8e-11 74.3 155 30.3
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 1.8e-11 74.3 123 32.5
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 8.8e-11 72.0 127 30.7
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 1.5e-10 71.2 139 30.2
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 1.5e-10 71.2 121 32.2
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 5.7e-10 69.3 125 33.6
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 1.7e-09 67.8 138 28.3
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 2.8e-09 67.0 139 30.2
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 3.7e-09 66.6 123 30.9
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 8.2e-09 65.5 108 33.3
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 1.1e-08 65.1 135 27.4
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 1.1e-08 65.1 141 29.1
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.4e-08 64.7 128 28.9
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 3.1e-08 63.5 134 29.9
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 4.1e-08 63.2 126 33.3
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 2.6e-07 60.5 188 26.1
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 3.4e-07 60.1 162 30.2
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 4.5e-07 59.7 135 25.9
Potri.T044600 Populus trichocarpa HOM05D000101 ORTHO05D000089 4.5e-07 59.7 136 30.1
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 1.7e-06 57.8 118 28.8
Potri.018G145558 Populus trichocarpa HOM05D000101 ORTHO05D000089 2.9e-06 57.0 133 29.3
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 2.9e-06 57.0 70 38.6
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 3.8e-06 56.6 159 27.0


User provided reference genes

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