Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 1.7e-171 605.9 306 100.0
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 1.4e-128 463.4 284 82.4
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 1.6e-121 439.9 295 80.7
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 9.5e-98 360.9 278 69.8
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 4.2e-93 345.5 278 67.6
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 1.2e-92 344.0 278 67.3
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 2.4e-88 329.7 279 65.2
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 3.4e-87 325.9 279 66.3
Thecc.02G022900 Theobroma cacao HOM05D002599 ORTHO05D012670 7.1e-69 265.0 179 75.4
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.7e-60 236.5 230 58.3
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.1e-60 235.3 230 57.8
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.7e-58 228.8 235 56.6
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 3.9e-51 206.1 263 49.4
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 1.1e-48 198.0 263 47.9
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 2.4e-48 196.8 260 48.8
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.1e-48 196.4 262 46.6
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 3.2e-45 186.4 288 46.2
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 3.7e-41 172.9 245 44.1
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.1e-40 169.9 280 43.9
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 7.0e-40 168.7 199 51.8
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.2e-39 167.9 199 51.3
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 1.5e-39 167.5 199 51.3
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 6.5e-38 162.2 280 43.6
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.1e-37 161.4 280 43.2
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.2e-36 157.9 235 45.5
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 6.7e-35 152.1 274 42.3
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.5e-34 151.0 278 41.0
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.3e-33 145.6 102 66.7
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-32 144.8 106 66.0
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.1e-32 141.7 105 65.7
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-31 139.8 104 65.4
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 5.5e-29 132.5 102 60.8
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-29 132.5 105 58.1
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-28 131.3 102 60.8
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-28 131.0 102 59.8
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-28 131.0 102 61.8
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 1.6e-28 131.0 101 59.4
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 2.7e-28 130.2 111 60.4
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 1.0e-27 128.3 102 59.8
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 3.0e-27 126.7 102 59.8
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 3.4e-26 123.2 105 52.4
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 9.8e-26 121.7 145 45.5
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 2.8e-25 120.2 105 51.4
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.8e-25 119.4 103 57.3
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.2e-21 105.5 271 33.2
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 2.1e-20 104.0 248 35.5
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 1.4e-19 101.3 127 45.7
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 1.8e-19 100.9 115 47.8
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 1.5e-18 97.8 127 42.5
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 1.7e-17 94.4 95 60.0
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 2.2e-17 94.0 127 40.2
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 2.8e-17 93.6 126 40.5
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 6.3e-17 92.4 97 48.5
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 9.1e-16 88.6 123 41.5
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.7e-15 87.0 67 61.2
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.5e-15 86.7 129 38.0
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.5e-15 86.3 101 42.6
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 5.9e-15 85.9 98 48.0
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-14 85.1 126 38.1
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.3e-14 84.0 114 41.2
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-14 84.0 103 44.7
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-13 81.3 103 43.7
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-13 81.3 102 39.2
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-13 81.3 102 39.2
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-13 80.9 103 41.7
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.2e-13 79.7 102 39.2
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-13 79.3 103 43.7
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 5.5e-13 79.3 100 39.0
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 5.5e-13 79.3 102 39.2
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.2e-13 79.0 137 36.5
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.2e-13 79.0 101 41.6
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 7.2e-13 79.0 104 42.3
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.5e-13 78.6 101 44.6
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.5e-13 78.6 103 44.7
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 9.5e-13 78.6 104 42.3
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 9.5e-13 78.6 101 40.6
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-12 78.2 104 42.3
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-12 77.8 103 43.7
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-12 77.0 100 41.0
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-12 76.6 131 40.5
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-12 76.6 102 42.2
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 3.6e-12 76.6 104 41.3
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-12 76.6 103 39.8
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 4.7e-12 76.3 101 37.6
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.7e-12 76.3 101 41.6
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.1e-12 75.9 138 33.3
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 6.1e-12 75.9 97 42.3
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.0e-12 75.5 102 43.1
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 8.0e-12 75.5 102 37.3
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-11 75.1 104 39.4
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-11 75.1 104 39.4
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-11 75.1 104 33.7
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-11 74.7 138 33.3
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-11 74.3 101 39.6
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-11 73.9 105 39.0
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.0e-11 73.6 103 42.7
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 3.0e-11 73.6 101 33.7
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-11 73.6 100 41.0
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-11 73.6 102 41.2
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.8e-11 72.4 108 38.9
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 6.8e-11 72.4 100 40.0
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.9e-11 72.0 98 40.8
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.9e-11 72.0 131 38.2
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 8.9e-11 72.0 102 37.3
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-10 71.6 105 37.1
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-10 71.6 102 41.2
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.5e-10 71.2 105 40.0
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-10 70.9 101 37.6
COL.COLO4_17744 Corchorus olitorius HOM05D002599 ORTHO05D158901 2.6e-10 70.5 55 63.6
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 2.6e-10 70.5 101 33.7
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.4e-10 70.1 104 38.5
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 4.4e-10 69.7 93 41.9
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-10 69.7 103 37.9
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.7e-10 69.3 107 38.3
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.7e-10 69.3 103 38.8
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 5.7e-10 69.3 101 34.7
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.8e-10 68.6 104 38.5
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.8e-10 68.6 104 37.5
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.8e-10 68.6 103 42.7
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-09 68.2 105 40.0
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-09 67.8 105 34.3
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-09 67.8 102 39.2
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.7e-09 67.8 101 37.6
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.9e-09 67.0 103 41.7
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 2.9e-09 67.0 86 45.3
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 3.7e-09 66.6 105 40.0
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.3e-09 65.9 101 39.6
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 8.3e-09 65.5 102 38.2
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 1.1e-08 65.1 151 29.8
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-08 65.1 102 37.3
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-08 65.1 102 37.3
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 1.1e-08 65.1 157 32.5
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-08 64.3 102 32.4
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.4e-08 63.9 104 37.5
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-08 63.5 104 38.5
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.2e-08 63.5 104 38.5
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 3.2e-08 63.5 104 37.5
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.4e-08 62.8 103 36.9
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 7.0e-08 62.4 100 38.0
COL.COLO4_29532 Corchorus olitorius HOM05D002599 ORTHO05D025152 9.2e-08 62.0 105 33.3
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 1.2e-07 61.6 106 31.1
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 1.6e-07 61.2 113 31.0
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 1.6e-07 61.2 113 31.0
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-07 61.2 100 32.0
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.6e-07 61.2 100 32.0
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 2.0e-07 60.8 114 32.5
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-07 60.8 99 39.4
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 2.0e-07 60.8 104 34.6
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 2.7e-07 60.5 107 34.6
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.7e-07 60.5 103 37.9
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.7e-07 60.5 100 32.0
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.5e-07 60.1 103 36.9
COL.COLO4_11751 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.6e-07 59.7 104 32.7
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.6e-07 59.7 105 32.4
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.8e-07 58.9 101 37.6
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.8e-07 58.9 101 37.6
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.8e-07 58.9 101 37.6
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-06 57.8 102 36.3
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-06 57.8 80 40.0
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-06 57.8 104 35.6
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-06 57.4 102 32.4
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.9e-06 57.0 103 35.9
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-06 56.6 96 38.5
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.0e-06 56.2 106 34.0


User provided reference genes

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