Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 9.4e-171 603.6 341 100.0
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 1.8e-129 466.5 341 78.3
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 6.2e-122 441.4 295 80.7
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 1.0e-108 397.5 314 67.8
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 3.9e-108 395.6 278 73.4
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 2.5e-107 392.9 278 73.0
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 3.4e-104 382.5 318 64.8
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 2.3e-100 369.8 318 64.5
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 7.0e-65 251.9 243 56.8
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.6e-64 250.8 243 56.4
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.9e-62 243.8 244 57.4
Thecc.02G022900 Theobroma cacao HOM05D002599 ORTHO05D012670 2.1e-61 240.4 208 70.7
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 3.8e-55 219.5 264 51.5
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.0e-51 207.2 262 49.2
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 1.3e-47 194.5 278 45.3
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 1.9e-46 190.7 266 44.7
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 1.3e-42 177.9 286 43.7
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.7e-42 177.6 294 43.2
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.7e-42 177.6 294 42.5
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.8e-42 176.8 196 53.6
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.7e-42 176.4 196 53.1
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 4.9e-42 176.0 196 53.1
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 8.3e-42 175.3 294 42.5
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 5.9e-40 169.1 294 42.9
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 6.6e-39 165.6 290 41.4
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.5e-38 163.7 278 43.5
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 4.0e-36 156.4 149 55.0
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-32 144.4 112 61.6
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.0e-31 139.4 105 63.8
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-30 138.3 128 53.1
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-30 137.5 104 63.5
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 1.4e-28 131.3 106 62.3
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 3.1e-28 130.2 127 53.5
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.0e-28 129.8 127 53.5
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 7.5e-27 125.6 127 50.4
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 4.9e-26 122.9 102 57.8
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 6.4e-26 122.5 127 49.6
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 2.4e-25 120.6 128 48.4
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 7.0e-25 119.0 128 49.2
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-24 117.5 141 46.8
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 2.0e-24 117.5 128 49.2
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-23 113.6 128 46.1
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.0e-23 112.8 128 46.1
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 3.3e-22 110.2 269 34.6
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.6e-21 107.8 136 45.6
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.7e-21 106.3 127 44.9
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 1.4e-20 104.8 127 44.1
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 3.1e-20 103.6 127 44.1
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 4.4e-19 99.8 127 41.7
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 5.8e-19 99.4 95 60.0
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 5.8e-19 99.4 126 42.1
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 5.8e-19 99.4 97 51.5
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 1.3e-18 98.2 109 48.6
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 9.2e-17 92.0 118 41.5
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-16 90.5 103 46.6
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 7.8e-16 89.0 126 38.9
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-15 87.4 102 42.2
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 3.9e-15 86.7 89 47.2
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-15 86.7 101 43.6
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.1e-15 86.3 103 44.7
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.1e-15 86.3 123 38.2
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 6.6e-15 85.9 101 41.6
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.6e-15 85.5 86 47.7
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.6e-15 85.5 102 45.1
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-14 84.3 103 45.6
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-14 84.3 103 44.7
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-14 83.6 103 41.7
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.3e-14 83.6 66 59.1
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.3e-14 83.6 100 43.0
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-14 83.6 102 38.2
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-14 83.6 102 38.2
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 4.3e-14 83.2 100 39.0
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.5e-14 82.0 113 41.6
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.5e-14 82.0 102 38.2
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-13 81.3 102 38.2
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 2.8e-13 80.5 97 44.3
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 2.8e-13 80.5 105 43.8
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 2.8e-13 80.5 105 43.8
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-13 79.7 102 45.1
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.2e-13 79.3 128 38.3
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.2e-13 79.3 101 40.6
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.1e-13 79.0 101 39.6
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 8.1e-13 79.0 90 43.3
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-12 77.8 104 39.4
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.8e-12 77.8 104 39.4
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-12 77.8 100 42.0
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-12 77.8 102 42.2
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-12 77.8 102 36.3
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-12 77.4 101 43.6
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 2.3e-12 77.4 90 42.2
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.0e-12 76.6 110 39.1
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 4.0e-12 76.6 122 36.9
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 5.2e-12 76.3 101 39.6
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.8e-12 75.9 105 40.0
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 6.8e-12 75.9 123 37.4
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.9e-12 75.5 110 39.1
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.9e-12 75.5 105 38.1
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.9e-12 75.5 102 42.2
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.2e-11 75.1 102 38.2
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-11 75.1 103 42.7
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.2e-11 75.1 101 39.6
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.5e-11 74.7 102 40.2
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-11 74.3 128 35.9
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-11 74.3 105 41.9
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.4e-11 73.6 85 42.4
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-11 73.6 102 38.2
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-11 73.6 102 37.3
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-11 73.6 102 38.2
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-11 73.2 104 32.7
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-11 73.2 102 36.3
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.8e-11 72.8 103 40.8
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 5.8e-11 72.8 106 34.9
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 5.8e-11 72.8 103 39.8
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.6e-11 72.4 107 38.3
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.6e-11 72.4 103 43.7
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 1.7e-10 71.2 149 29.5
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 2.2e-10 70.9 105 41.0
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 3.8e-10 70.1 86 46.5
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.9e-10 69.7 131 37.4
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 6.4e-10 69.3 102 38.2
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 8.4e-10 68.9 155 31.6
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.4e-09 68.2 106 37.7
COL.COLO4_17744 Corchorus olitorius HOM05D002599 ORTHO05D158901 1.9e-09 67.8 62 59.7
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 1.9e-09 67.8 101 34.7
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-09 67.8 105 34.3
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 2.4e-09 67.4 102 33.3
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.4e-09 67.4 104 38.5
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 3.2e-09 67.0 106 32.1
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 3.2e-09 67.0 101 31.7
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 7.1e-09 65.9 88 42.0
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-08 65.1 103 35.9
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-08 64.7 103 35.9
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.6e-08 64.7 103 35.9
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-08 64.7 82 41.5
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-08 64.3 119 36.1
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.1e-08 64.3 109 33.9
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 2.7e-08 63.9 100 39.0
COL.COLO4_29532 Corchorus olitorius HOM05D002599 ORTHO05D025152 3.5e-08 63.5 108 30.6
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 3.5e-08 63.5 101 29.7
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.0e-08 62.8 103 37.9
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.8e-08 62.4 102 37.3
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.8e-08 62.4 98 36.7
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.8e-08 62.4 100 33.0
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.8e-08 62.4 100 33.0
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.8e-08 62.4 98 36.7
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.0e-07 62.0 105 32.4
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-07 61.6 100 33.0
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-07 61.6 103 36.9
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 1.7e-07 61.2 144 31.2
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 2.3e-07 60.8 103 32.0
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 3.0e-07 60.5 113 29.2
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 3.0e-07 60.5 113 29.2
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 3.9e-07 60.1 103 35.0
Gohir.A12G027233 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.1e-07 59.7 104 32.7
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.6e-07 59.3 104 29.8
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.6e-07 58.9 103 35.0
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 1.5e-06 58.2 108 32.4
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 1.5e-06 58.2 103 34.0
COL.COLO4_17180 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.9e-06 57.8 103 30.1
Atru.chr2.68 Acer truncatum HOM05D002599 ORTHO05D001895 2.5e-06 57.4 105 32.4
Ciclev10003967m.g Citrus clementina HOM05D022543 ORTHO05D001895 2.5e-06 57.4 108 31.5
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.5e-06 57.4 104 27.9
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 2.5e-06 57.4 87 37.9
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-06 57.0 100 35.0
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-06 57.0 100 35.0
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.3e-06 57.0 100 35.0
Thecc.07G108700 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-06 57.0 136 25.7
Gohir.D12G026733 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.3e-06 56.6 104 31.7
Thecc.07G108400 Theobroma cacao HOM05D002599 ORTHO05D001895 5.6e-06 56.2 104 28.8
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.3e-06 55.8 104 31.7
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.6e-06 55.5 96 36.5


User provided reference genes

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