Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 6.7e-174 614.0 330 100.0
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 1.7e-129 466.5 341 78.3
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 6.6e-129 464.5 284 82.4
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 8.7e-105 384.4 303 67.7
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 4.9e-100 368.6 320 64.1
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 3.0e-97 359.4 307 63.8
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 3.0e-97 359.4 307 63.8
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 2.4e-94 349.7 307 63.5
Thecc.02G022900 Theobroma cacao HOM05D002599 ORTHO05D012670 2.0e-72 276.9 202 80.2
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 4.2e-59 232.6 230 56.5
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.5e-59 232.3 230 57.0
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 4.0e-57 226.1 241 55.6
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.0e-53 213.8 264 48.9
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 1.4e-49 201.1 260 49.2
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 6.8e-49 198.7 264 48.9
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 8.8e-49 198.4 262 46.2
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 7.2e-43 178.7 293 43.0
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.4e-41 174.5 280 43.6
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 4.0e-41 172.9 275 42.5
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 5.2e-41 172.6 275 42.5
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.0e-40 170.6 252 46.4
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.4e-40 169.9 197 53.8
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 4.4e-40 169.5 230 45.7
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 5.7e-40 169.1 197 53.3
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 8.3e-39 165.2 271 41.3
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 1.8e-38 164.1 142 57.7
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 4.6e-37 159.5 278 41.0
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.8e-32 142.5 106 62.3
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.9e-31 139.4 105 61.0
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-30 138.3 131 51.9
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-30 137.5 104 60.6
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.0e-30 135.6 105 58.1
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 1.2e-29 134.8 101 61.4
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-27 128.3 102 57.8
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 1.5e-27 127.9 111 58.6
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.5e-27 127.1 131 48.1
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 2.5e-27 127.1 105 53.3
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.6e-27 125.9 102 57.8
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 2.1e-26 124.0 105 52.4
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 3.6e-26 123.2 131 47.3
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 6.2e-26 122.5 102 55.9
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 6.8e-25 119.0 131 46.6
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 2.6e-24 117.1 131 46.6
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.9e-22 110.9 136 44.9
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 5.1e-20 102.8 246 32.5
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 1.1e-19 101.7 248 32.7
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.5e-19 100.5 100 49.0
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 9.5e-19 98.6 109 48.6
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 8.1e-18 95.5 100 47.0
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 1.2e-16 91.7 100 44.0
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 1.5e-16 91.3 99 44.4
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-16 91.3 101 45.5
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-16 90.5 125 41.6
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 3.4e-16 90.1 95 56.8
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-16 89.7 125 39.2
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 5.8e-16 89.4 133 39.8
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-15 87.8 101 44.6
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-15 87.8 126 38.1
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.7e-15 86.7 114 39.5
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-14 85.1 67 58.2
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-14 84.3 130 39.2
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.4e-14 84.0 103 43.7
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-14 83.2 103 40.8
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 4.1e-14 83.2 102 39.2
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.1e-14 83.2 102 40.2
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 5.4e-14 82.8 100 42.0
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-13 81.3 102 39.2
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.7e-13 80.5 102 41.2
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-13 80.1 114 39.5
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.5e-13 80.1 102 39.2
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.6e-13 79.7 130 36.9
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.6e-13 79.7 103 41.7
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.6e-13 79.7 101 41.6
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 6.0e-13 79.3 101 38.6
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.8e-13 79.0 101 38.6
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 7.8e-13 79.0 102 38.2
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-12 78.6 101 43.6
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 1.3e-12 78.2 106 39.6
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-12 78.2 114 38.6
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-12 77.8 103 42.7
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-12 77.8 103 41.7
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-12 77.8 104 35.6
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-12 77.4 101 44.6
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 2.3e-12 77.4 101 42.6
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 2.3e-12 77.4 104 41.3
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-12 77.0 114 38.6
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 3.0e-12 77.0 104 41.3
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-12 76.6 105 40.0
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 3.9e-12 76.6 104 41.3
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.1e-12 76.3 104 38.5
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.1e-12 76.3 104 38.5
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.1e-12 76.3 102 41.2
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 5.1e-12 76.3 98 37.8
COL.COLO4_17744 Corchorus olitorius HOM05D002599 ORTHO05D158901 6.6e-12 75.9 55 67.3
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.6e-12 75.9 100 38.0
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.6e-12 75.9 102 41.2
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-11 75.1 103 43.7
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-11 75.1 104 40.4
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-11 74.3 100 41.0
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.9e-11 74.3 100 37.0
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.5e-11 73.9 105 38.1
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.5e-11 73.9 98 38.8
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-11 73.9 105 38.1
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.3e-11 73.6 102 42.2
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 4.3e-11 73.2 103 36.9
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.6e-11 72.8 126 37.3
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 5.6e-11 72.8 101 36.6
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 5.6e-11 72.8 101 33.7
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 7.3e-11 72.4 93 41.9
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.3e-11 72.4 104 37.5
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.6e-11 72.0 88 38.6
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.6e-11 72.0 102 42.2
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 9.6e-11 72.0 101 36.6
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-10 70.9 104 37.5
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 2.1e-10 70.9 162 31.5
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-10 70.9 104 36.5
Sabra15G0012600 Salix brachista HOM05D002599 ORTHO05D001895 2.1e-10 70.9 100 39.0
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 2.1e-10 70.9 102 35.3
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.8e-10 70.5 107 38.3
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.6e-10 70.1 103 39.8
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.6e-10 70.1 108 38.9
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 8.1e-10 68.9 101 33.7
Thecc.02G024900 Theobroma cacao HOM05D002599 ORTHO05D001895 8.1e-10 68.9 152 30.9
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-09 68.6 105 40.0
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 1.1e-09 68.6 156 32.7
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-09 68.2 102 33.3
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.4e-09 68.2 146 30.8
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 3.1e-09 67.0 86 45.3
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 8.9e-09 65.5 106 31.1
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 8.9e-09 65.5 102 35.3
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-08 65.1 105 39.0
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 2.0e-08 64.3 73 43.8
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-08 64.3 105 39.0
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 2.6e-08 63.9 104 32.7
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-08 63.5 102 36.3
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.4e-08 63.5 102 36.3
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-08 63.2 105 31.4
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.6e-08 62.4 99 37.4
COL.COLO4_29532 Corchorus olitorius HOM05D002599 ORTHO05D025152 7.6e-08 62.4 105 34.3
COL.COLO4_11751 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.9e-08 62.0 103 31.1
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 9.9e-08 62.0 108 34.3
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-07 61.6 102 35.3
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 1.7e-07 61.2 107 35.5
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.7e-07 61.2 108 34.3
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.7e-07 61.2 108 34.3
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-07 60.8 99 37.4
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-07 60.8 101 37.6
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-07 60.8 101 37.6
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-07 60.8 101 37.6
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.9e-07 60.5 103 35.0
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-07 60.1 71 45.1
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.8e-07 60.1 87 39.1
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.9e-07 59.7 100 32.0
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.4e-07 59.3 100 32.0
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.4e-07 59.3 100 32.0
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 6.4e-07 59.3 100 37.0
Prupe.1G574400 Prunus persica HOM05D002599 ORTHO05D001895 6.4e-07 59.3 104 33.7
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 8.4e-07 58.9 110 32.7
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-06 58.5 105 37.1
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-06 57.4 103 35.0
Atru.chr2.68 Acer truncatum HOM05D002599 ORTHO05D001895 3.2e-06 57.0 105 32.4
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.2e-06 56.6 104 27.9
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 5.4e-06 56.2 102 29.4
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 5.4e-06 56.2 102 29.4
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.4e-06 56.2 102 34.3
Gohir.A12G027233 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.4e-06 56.2 104 31.7
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.4e-06 56.2 103 35.0
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.1e-06 55.8 96 36.5


User provided reference genes

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