Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 3.8e-165 584.7 289 100.0
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 2.0e-145 519.2 289 91.0
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 9.9e-121 437.2 292 75.0
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 9.3e-119 430.6 293 73.7
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 1.9e-111 406.4 278 74.1
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 9.9e-105 384.0 318 64.8
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 4.0e-98 362.1 307 63.8
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 3.4e-89 332.4 279 65.2
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 8.3e-59 231.5 298 49.7
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 4.1e-58 229.2 298 49.3
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.5e-56 221.9 300 48.7
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 2.7e-49 199.9 304 47.0
Thecc.02G022900 Theobroma cacao HOM05D002599 ORTHO05D012670 4.2e-47 192.6 209 55.5
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 1.2e-46 191.0 273 45.8
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 2.1e-46 190.3 285 42.5
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 5.7e-44 182.2 286 43.4
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 1.8e-42 177.2 286 42.7
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.4e-42 176.8 297 43.4
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.4e-42 175.6 229 46.7
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 3.5e-41 172.9 296 42.9
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.7e-40 170.6 296 42.2
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 8.6e-40 168.3 295 42.4
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.3e-39 166.4 221 46.6
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 4.3e-39 166.0 221 46.2
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 4.3e-39 166.0 292 41.8
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 5.6e-39 165.6 221 46.2
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.2e-34 149.8 273 41.4
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-30 137.9 106 60.4
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-29 134.4 105 59.0
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.0e-29 132.9 104 58.7
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-28 129.8 101 58.4
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 3.4e-28 129.8 101 58.4
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 7.5e-28 128.6 290 34.1
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.4e-26 123.6 288 33.7
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-26 123.2 122 49.2
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 7.1e-26 122.1 289 33.6
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 1.2e-25 121.3 101 53.5
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 7.8e-25 118.6 111 53.2
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 1.0e-24 118.2 101 52.5
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 1.7e-24 117.5 105 52.4
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 7.3e-23 112.1 99 52.5
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-22 110.5 99 53.5
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 3.6e-22 109.8 141 43.3
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.7e-22 109.4 99 52.5
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 4.7e-22 109.4 141 43.3
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.1e-21 106.7 99 51.5
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.4e-20 103.2 103 51.5
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 4.9e-19 99.4 134 41.0
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 3.2e-18 96.7 134 39.6
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 4.1e-18 96.3 133 39.8
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-17 94.7 97 46.4
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 2.3e-16 90.5 115 40.9
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-16 90.1 103 42.7
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 6.6e-16 89.0 144 44.4
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-15 87.8 103 37.9
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.9e-15 87.4 149 36.9
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-15 87.0 101 42.6
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-15 87.0 103 42.7
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-15 86.7 103 37.9
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 7.3e-15 85.5 101 40.6
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.6e-15 85.1 100 42.0
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.6e-15 85.1 103 42.7
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 9.6e-15 85.1 124 37.1
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-14 84.7 103 37.9
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.1e-14 84.0 86 46.5
Thecc.01G178700 Theobroma cacao HOM05D002599 ORTHO05D409667 2.8e-14 83.6 76 63.2
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 3.6e-14 83.2 100 38.0
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-14 83.2 100 42.0
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-14 82.8 102 40.2
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.2e-14 82.4 105 39.0
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.2e-14 82.4 105 39.0
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 6.2e-14 82.4 103 36.9
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.1e-14 82.0 101 38.6
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.1e-14 82.0 103 41.7
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.8e-13 80.9 65 56.9
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-13 80.9 103 41.7
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-13 80.9 103 35.0
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 2.4e-13 80.5 114 38.6
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 2.4e-13 80.5 105 41.0
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 2.4e-13 80.5 118 38.1
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.1e-13 80.1 101 39.6
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 4.0e-13 79.7 89 43.8
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.0e-13 79.7 101 42.6
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.0e-13 79.7 102 43.1
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.2e-13 79.3 110 40.0
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.8e-13 79.0 103 41.7
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 6.8e-13 79.0 97 41.2
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 6.8e-13 79.0 90 40.0
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 8.9e-13 78.6 101 42.6
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 8.9e-13 78.6 104 34.6
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.2e-12 78.2 110 39.1
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-12 77.8 105 40.0
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-12 77.4 102 39.2
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-12 77.4 90 38.9
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.6e-12 77.0 110 39.1
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-12 77.0 107 37.4
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-12 77.0 102 42.2
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.4e-12 76.6 129 38.0
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.9e-12 75.1 106 35.8
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.7e-11 74.3 130 35.4
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.7e-11 74.3 85 43.5
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 1.7e-11 74.3 104 35.6
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.7e-11 74.3 101 39.6
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-11 73.9 102 40.2
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 2.9e-11 73.6 101 38.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.8e-11 73.2 103 40.8
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 3.8e-11 73.2 104 35.6
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.8e-11 73.2 105 34.3
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-11 73.2 102 34.3
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.9e-11 72.8 108 37.0
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.9e-11 72.8 106 38.7
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.9e-11 72.8 103 41.7
COL.COLO4_29532 Corchorus olitorius HOM05D002599 ORTHO05D025152 6.4e-11 72.4 108 34.3
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.4e-11 72.4 129 37.2
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-10 71.6 106 38.7
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-10 71.2 103 41.7
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-10 71.2 103 34.0
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 1.9e-10 70.9 106 41.5
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.9e-10 70.9 103 37.9
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 2.4e-10 70.5 101 30.7
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 2.4e-10 70.5 106 38.7
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.2e-10 70.1 105 33.3
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 4.2e-10 69.7 106 30.2
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 4.2e-10 69.7 136 33.1
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 5.4e-10 69.3 87 43.7
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 7.1e-10 68.9 102 37.3
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.5e-09 66.6 138 29.0
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 3.5e-09 66.6 102 33.3
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 4.6e-09 66.2 106 33.0
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.6e-09 66.2 103 40.8
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.6e-09 66.2 108 32.4
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 4.6e-09 66.2 103 36.9
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 6.0e-09 65.9 109 33.0
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-08 65.1 138 29.0
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-08 65.1 138 28.3
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 1.3e-08 64.7 83 36.1
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-08 64.7 102 35.3
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-08 64.7 103 35.0
COL.COLO4_17744 Corchorus olitorius HOM05D002599 ORTHO05D158901 1.7e-08 64.3 56 53.6
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-08 63.9 104 36.5
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-08 63.5 99 38.4
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 3.0e-08 63.5 149 27.5
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.0e-08 63.5 104 36.5
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.9e-08 63.2 104 34.6
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.9e-08 63.2 98 35.7
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.9e-08 63.2 98 35.7
Thecc.07G108700 Theobroma cacao HOM05D002599 ORTHO05D001895 3.9e-08 63.2 136 28.7
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 6.6e-08 62.4 102 33.3
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 6.6e-08 62.4 102 33.3
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.6e-08 62.4 105 35.2
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.6e-08 62.4 105 35.2
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 6.6e-08 62.4 104 35.6
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 8.7e-08 62.0 100 36.0
Thecc.07G108400 Theobroma cacao HOM05D002599 ORTHO05D001895 8.7e-08 62.0 104 32.7
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.1e-07 61.6 103 31.1
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-07 60.8 111 34.2
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-07 60.8 103 34.0
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-07 60.8 103 34.0
Sabra03G0009200 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-07 60.8 103 34.0
Sabra03G0009800 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-07 60.8 103 34.0
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.3e-07 59.7 100 37.0
Gohir.A01G056300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.3e-07 59.7 104 34.6
Gohir.D01G042900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.3e-07 59.7 104 34.6
Gorai.002G061900 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.3e-07 59.7 104 34.6
Sabra03G0009500 Salix brachista HOM05D002599 ORTHO05D001895 5.6e-07 59.3 104 34.6
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 5.6e-07 59.3 101 35.6
Gohir.A12G027233 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.3e-07 58.9 105 32.4
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.3e-07 58.9 94 34.0
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 7.3e-07 58.9 100 31.0
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-06 58.2 105 29.5
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-06 58.2 103 33.0
Potri.004G220300 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-06 58.2 105 29.5
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 1.6e-06 57.8 102 30.4
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.1e-06 57.4 104 29.8
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-06 57.0 101 33.7
Gohir.D12G026700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-06 57.0 105 29.5
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-06 57.0 101 33.7
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.8e-06 57.0 101 33.7
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-06 57.0 84 34.5
Atru.chr4.3203 Acer truncatum HOM05D002599 ORTHO05D001895 3.6e-06 56.6 87 36.8
Gohir.D12G026733 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.8e-06 56.2 105 31.4
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.1e-06 55.5 105 31.4
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 8.1e-06 55.5 97 36.1


User provided reference genes

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