Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G022100 Theobroma cacao HOM05D000855 ORTHO05D002321 8.3e-107 391.7 199 100.0
Thecc.10G067400 Theobroma cacao HOM05D000855 ORTHO05D002321 2.9e-59 233.8 292 51.7
Thecc.02G021700 Theobroma cacao HOM05D000855 ORTHO05D002321 7.2e-58 229.2 260 54.2
COL.COLO4_23754 Corchorus olitorius HOM05D000855 ORTHO05D002321 7.4e-47 192.6 297 45.1
Duzib114G0150 Durio zibethinus HOM05D000855 ORTHO05D002321 2.2e-46 191.0 297 44.4
Gohir.D04G082800 Gossypium hirsutum HOM05D000855 ORTHO05D002321 1.2e-41 175.3 297 41.8
Gohir.A05G344100 Gossypium hirsutum HOM05D000855 ORTHO05D002321 5.2e-40 169.9 297 41.8
Gorai.012G093500 Gossypium raimondii HOM05D000855 ORTHO05D002321 6.7e-40 169.5 297 41.1
Gohir.A05G344300 Gossypium hirsutum HOM05D000855 ORTHO05D002321 1.5e-39 168.3 297 41.4
Gorai.012G093200 Gossypium raimondii HOM05D000855 ORTHO05D002321 2.2e-38 164.5 297 41.1
Gohir.D04G082500 Gossypium hirsutum HOM05D000855 ORTHO05D002321 2.8e-38 164.1 297 41.1
Potri.010G216900 Populus trichocarpa HOM05D000855 ORTHO05D002321 2.0e-28 131.3 262 38.2
Sabra10G0167800 Salix brachista HOM05D000855 ORTHO05D002321 4.5e-28 130.2 262 38.2
Manes.10G041900 Manihot esculenta HOM05D000855 ORTHO05D002321 2.2e-27 127.9 262 36.6
Cpa.g.sc53.36 Carica papaya HOM05D000855 ORTHO05D002321 2.9e-27 127.5 281 33.8
Potri.008G044600 Populus trichocarpa HOM05D000855 ORTHO05D002321 6.5e-27 126.3 262 37.0
Sabra08G0030900 Salix brachista HOM05D000855 ORTHO05D002321 2.5e-26 124.4 262 36.6
CiPaw.02G176900 Carya illinoinensis HOM05D000855 ORTHO05D002321 4.7e-25 120.2 259 34.4
Manes.10G041700 Manihot esculenta HOM05D000855 ORTHO05D002321 1.0e-24 119.0 263 33.8
Haze_16938 Corylus avellana HOM05D000855 ORTHO05D002321 1.8e-24 118.2 275 34.2
Cfa001590 Carpinus fangiana HOM05D000855 ORTHO05D002321 2.3e-24 117.9 276 34.1
TWI38G0064 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 2.3e-24 117.9 244 35.7
QL08p056900 Quercus lobata HOM05D000855 ORTHO05D002321 1.5e-23 115.2 274 33.6
TWI15G0675 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 2.0e-23 114.8 244 36.9
CsaV3_5G006280 Cucumis sativus L. HOM05D000855 ORTHO05D002321 4.4e-23 113.6 228 35.5
Ciclev10030525m.g Citrus clementina HOM05D000855 ORTHO05D002321 9.8e-23 112.5 251 34.3
FvH4_7g20250 Fragaria vesca HOM05D000855 ORTHO05D002321 1.3e-22 112.1 276 33.7
FAN03G1459 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.7e-22 111.7 276 33.3
FAN06G2522 Fragaria x ananassa HOM05D000855 ORTHO05D002321 2.2e-22 111.3 276 33.3
MD07G1179800 Malus domestica HOM05D000855 ORTHO05D002321 6.3e-22 109.8 270 32.2
MELO3C011728.2 Cucumis melo HOM05D000855 ORTHO05D002321 1.1e-21 109.0 273 31.5
FAN10G3244 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.1e-21 109.0 290 32.1
FAN01G0071 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.8e-21 108.2 254 33.9
FAN03G2424 Fragaria x ananassa HOM05D000855 ORTHO05D002321 1.8e-21 108.2 254 33.9
RcHm_v2.0_Chr1g0364181 Rosa chinensis HOM05D000855 ORTHO05D002321 1.8e-21 108.2 253 34.0
Prupe.2G219200 Prunus persica HOM05D000855 ORTHO05D002321 5.4e-21 106.7 270 33.0
VMungo0720G2399 Vigna mungo HOM05D000855 ORTHO05D002321 7.0e-21 106.3 246 33.7
MD01G1112200 Malus domestica HOM05D000855 ORTHO05D002321 1.2e-20 105.5 260 33.1
Glyma.20G198402 Glycine max HOM05D000855 ORTHO05D002321 2.7e-20 104.4 280 30.7
ClCG02G013880 Citrullus lanatus HOM05D000855 ORTHO05D002321 7.7e-20 102.8 273 30.8
Eucgr.G02799 Eucalyptus grandis HOM05D000855 ORTHO05D002321 1.0e-19 102.4 257 32.3
Phvul.007G134100 Phaseolus vulgaris HOM05D000855 ORTHO05D002321 1.7e-19 101.7 250 31.6
Lj5g0013876 Lotus japonicus HOM05D000855 ORTHO05D002321 2.9e-19 100.9 229 33.2
CiPaw.02G176700 Carya illinoinensis HOM05D000855 ORTHO05D002321 3.8e-19 100.5 275 31.3
Dinv31338 Davidia involucrata HOM05D000855 ORTHO05D002321 3.8e-19 100.5 272 32.7
Phvul.007G240300 Phaseolus vulgaris HOM05D000855 ORTHO05D002321 8.6e-19 99.4 282 31.2
VMungo0720G0251 Vigna mungo HOM05D000855 ORTHO05D002321 8.6e-19 99.4 282 31.6
Glyma.10G116800 Glycine max HOM05D000855 ORTHO05D002321 2.5e-18 97.8 328 29.6
Glyma.02G087500 Glycine max HOM05D000855 ORTHO05D002321 5.5e-18 96.7 325 29.2
Sed0010715 Sechium edule HOM05D000855 ORTHO05D002321 9.5e-18 95.9 259 30.9
Ca_27423_v3 Cicer arietinum L. HOM05D000855 ORTHO05D002321 1.2e-17 95.5 282 31.9
Glyma.10G192100 Glycine max HOM05D000855 ORTHO05D002321 3.6e-17 94.0 279 29.4
Lj6g0011965 Lotus japonicus HOM05D000855 ORTHO05D002321 8.0e-17 92.8 288 30.6
Lalb_Chr03g0036491 Lupinus albus HOM05D000855 ORTHO05D002321 1.4e-16 92.0 262 30.9
AUR62026103 Chenopodium quinoa HOM05D000855 ORTHO05D002321 2.3e-16 91.3 266 30.5
Sed0014953 Sechium edule HOM05D000855 ORTHO05D002321 2.3e-16 91.3 266 29.3
AUR62024512 Chenopodium quinoa HOM05D000855 ORTHO05D002321 5.2e-16 90.1 266 30.1
CSS0010994 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D002321 8.8e-16 89.4 282 30.1
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 3.4e-15 87.4 269 28.6
TPR.G18567 Trifolium pratense HOM05D000855 ORTHO05D002321 4.4e-15 87.0 257 29.6
Oeu055047.1 Olea europaea HOM05D000855 ORTHO05D002321 5.7e-15 86.7 179 33.5
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 7.5e-15 86.3 269 28.3
Ca_09783_v3 Cicer arietinum L. HOM05D000855 ORTHO05D002321 7.5e-15 86.3 256 28.5
Medtr1g049120 Medicago truncatula HOM05D000855 ORTHO05D002321 9.8e-15 85.9 67 70.1
Lalb_Chr03g0036481 Lupinus albus HOM05D000855 ORTHO05D002321 3.7e-14 84.0 265 29.4
Psat6g049760 Pisum sativum HOM05D000855 ORTHO05D002321 3.7e-14 84.0 57 75.4
TAR623G1395 Trochodendron aralioides HOM05D000855 ORTHO05D002321 3.7e-14 84.0 303 26.7
Dinv31342 Davidia involucrata HOM05D000855 ORTHO05D002321 6.3e-14 83.2 258 30.6
Medtr1g072780 Medicago truncatula HOM05D000855 ORTHO05D002321 6.3e-14 83.2 251 28.7
TPR.G35697 Trifolium pratense HOM05D000855 ORTHO05D002321 8.3e-14 82.8 57 73.7
Psat6g140320 Pisum sativum HOM05D000855 ORTHO05D002321 1.4e-13 82.0 241 29.0
THA.LOC104824224 Tarenaya hassleriana HOM05D000855 ORTHO05D002321 1.4e-13 82.0 81 54.3
AUR62017379 Chenopodium quinoa HOM05D000855 ORTHO05D002321 1.8e-13 81.6 255 30.6
Ah.12g058150 Amaranthus hybridus HOM05D000855 ORTHO05D002321 2.4e-13 81.3 265 28.7
AUR62010520 Chenopodium quinoa HOM05D000855 ORTHO05D002321 3.1e-13 80.9 266 29.7
ECA233G6180 Erigeron canadensis HOM05D000855 ORTHO05D002321 3.1e-13 80.9 57 70.2
Psat0s1977g0040 Pisum sativum HOM05D000855 ORTHO05D002321 3.1e-13 80.9 57 70.2
PGR044G1213 Punica granatum HOM05D000855 ORTHO05D002321 4.1e-13 80.5 236 28.8
THA.LOC104825235 Tarenaya hassleriana HOM05D000855 ORTHO05D002321 4.1e-13 80.5 81 55.6
Lsat_1_v5_gn_8_21460 Lactuca sativa HOM05D000855 ORTHO05D002321 5.4e-13 80.1 57 68.4
EL10Ac3g07139 Beta vulgaris HOM05D000855 ORTHO05D002321 7.0e-13 79.7 266 28.9
Migut.F02023 Erythranthe guttata HOM05D000855 ORTHO05D002321 7.0e-13 79.7 56 69.6
Oeu007703.1 Olea europaea HOM05D000855 ORTHO05D002321 7.0e-13 79.7 185 31.9
ECA238G0012 Erigeron canadensis HOM05D000855 ORTHO05D002321 9.2e-13 79.3 60 65.0
EL10Ac5g12631 Beta vulgaris HOM05D000855 ORTHO05D002321 1.2e-12 79.0 250 30.4
Sc20g0002090 Simmondsia chinensis HOM05D000855 ORTHO05D002321 1.2e-12 79.0 57 71.9
HanXRQChr12g0370321 Helianthus annuus HOM05D000855 ORTHO05D002321 2.0e-12 78.2 57 66.7
THA.LOC104827500 Tarenaya hassleriana HOM05D000855 ORTHO05D002321 2.0e-12 78.2 84 50.0
TAR636G1494 Trochodendron aralioides HOM05D000855 ORTHO05D002321 2.0e-12 78.2 66 63.6
SalBow1G2996 Salvia bowleyana HOM05D000855 ORTHO05D002321 2.7e-12 77.8 56 69.6
Thhalv10010125m.g Eutrema salsugineum HOM05D000855 ORTHO05D002321 3.5e-12 77.4 81 53.1
Atru.chr12.632 Acer truncatum HOM05D000855 ORTHO05D002321 4.5e-12 77.0 100 48.0
Sp5g07670 Schrenkiella parvula HOM05D000855 ORTHO05D002321 4.5e-12 77.0 81 53.1
Carub.0002s0696 Capsella rubella HOM05D000855 ORTHO05D002321 5.9e-12 76.6 85 49.4
CARHR164710 Cardamine hirsuta HOM05D000855 ORTHO05D002321 5.9e-12 76.6 88 48.9
HanXRQChr12g0370331 Helianthus annuus HOM05D000855 ORTHO05D002321 5.9e-12 76.6 57 64.9
Rhsim09G0154300 Rhododendron simsii HOM05D000855 ORTHO05D002321 5.9e-12 76.6 265 29.1
Aqoxy1G01590 Aquilegia oxysepala HOM05D000855 ORTHO05D002321 7.8e-12 76.3 61 62.3
Carub.0002s0697 Capsella rubella HOM05D000855 ORTHO05D002321 7.8e-12 76.3 81 53.1
AL5G35840 Arabidopsis lyrata HOM05D000855 ORTHO05D002321 1.0e-11 75.9 85 49.4
PGSC0003DMG400010571 Solanum tuberosum HOM05D000855 ORTHO05D002321 1.0e-11 75.9 257 28.8
HanXRQChr12g0370341 Helianthus annuus HOM05D000855 ORTHO05D002321 1.3e-11 75.5 57 63.2
Sp5g07680 Schrenkiella parvula HOM05D000855 ORTHO05D002321 1.3e-11 75.5 81 51.9
BraA04t16215Z Brassica rapa HOM05D000855 ORTHO05D002321 1.7e-11 75.1 86 50.0
Carub.0002s0694 Capsella rubella HOM05D000855 ORTHO05D002321 1.7e-11 75.1 57 61.4
Lj1C924G11 Lonicera japonica HOM05D000855 ORTHO05D001431 1.7e-11 75.1 59 66.1
Actinidia03026 Actinidia chinensis HOM05D000855 ORTHO05D002321 2.3e-11 74.7 57 64.9
BcaB02g08459 Brassica carinata HOM05D000855 ORTHO05D002321 2.3e-11 74.7 86 48.8
vmacro04892 Vaccinium macrocarpon HOM05D000855 ORTHO05D002321 2.3e-11 74.7 266 28.9
Actinidia38246 Actinidia chinensis HOM05D000855 ORTHO05D002321 2.9e-11 74.3 281 27.0
Aa31LG11G8110 Aethionema arabicum HOM05D000855 ORTHO05D002321 2.9e-11 74.3 93 46.2
MSTRG.27445 Avicennia marina HOM05D000855 ORTHO05D002321 2.9e-11 74.3 56 67.9
A04p05040 Brassica napus HOM05D000855 ORTHO05D002321 2.9e-11 74.3 57 63.2
Carub.0002s0695 Capsella rubella HOM05D000855 ORTHO05D002321 2.9e-11 74.3 57 63.2
HanXRQChr14g0435641 Helianthus annuus HOM05D000855 ORTHO05D002321 2.9e-11 74.3 71 57.7
TAR633G0412 Trochodendron aralioides HOM05D000855 ORTHO05D002321 2.9e-11 74.3 65 63.1
A04p05060 Brassica napus HOM05D000855 ORTHO05D002321 3.8e-11 73.9 86 48.8
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 3.8e-11 73.9 85 49.4
BraA04t16217Z Brassica rapa HOM05D000855 ORTHO05D002321 3.8e-11 73.9 86 48.8
MSTRG.27446 Avicennia marina HOM05D000855 ORTHO05D002321 5.0e-11 73.6 56 64.3
MSTRG.9206 Avicennia marina HOM05D000855 ORTHO05D002321 6.6e-11 73.2 56 66.1
BcaB02g08462 Brassica carinata HOM05D000855 ORTHO05D002321 6.6e-11 73.2 57 61.4
C04p37540 Brassica napus HOM05D000855 ORTHO05D002321 6.6e-11 73.2 57 61.4
SGA_v2.0_scaffold62G21451 Striga asiatica HOM05D000855 ORTHO05D002321 6.6e-11 73.2 56 62.5
Thhalv10010166m.g Eutrema salsugineum HOM05D000855 ORTHO05D002321 8.6e-11 72.8 86 47.7
Medtr2g047912 Medicago truncatula HOM05D000855 ORTHO05D002321 8.6e-11 72.8 57 68.4
AT3G54760 Arabidopsis thaliana HOM05D000855 ORTHO05D002321 1.5e-10 72.0 57 61.4
Ah.15g092080 Amaranthus hybridus HOM05D000855 ORTHO05D000193 3.3e-10 70.9 91 48.4
BcaC02g09702 Brassica carinata HOM05D000855 ORTHO05D002321 3.3e-10 70.9 57 59.6
BolC4t25319H Brassica oleracea HOM05D000855 ORTHO05D002321 3.3e-10 70.9 57 59.6
Nitab4.5_0000061g0230 Nicotiana tabacum HOM05D000855 ORTHO05D002321 3.3e-10 70.9 57 66.7
AL5G35830 Arabidopsis lyrata HOM05D000855 ORTHO05D002321 4.3e-10 70.5 86 46.5
CAN.G113.8 Capsicum annuum HOM05D000855 ORTHO05D002321 9.5e-10 69.3 257 27.6
DCAR_006466 Daucus carota HOM05D000855 ORTHO05D002321 9.5e-10 69.3 59 55.9
Solyc04g049950.1 Solanum lycopersicum HOM05D000855 ORTHO05D002321 9.5e-10 69.3 257 28.0
Sopen04g020580 Solanum pennellii HOM05D000855 ORTHO05D002321 9.5e-10 69.3 257 28.0
Migut.F02025 Erythranthe guttata HOM05D000855 ORTHO05D002321 2.1e-09 68.2 56 57.1
Nitab4.5_0005387g0010 Nicotiana tabacum HOM05D000855 ORTHO05D002321 2.1e-09 68.2 243 27.6
Hma1.2p1_0111F.1_g053880 Hydrangea macrophylla HOM05D000855 ORTHO05D002321 2.8e-09 67.8 197 27.9
Peaxi162Scf00373g00021 Petunia axillaris HOM05D000855 ORTHO05D002321 2.8e-09 67.8 57 63.2
CARHR164700 Cardamine hirsuta HOM05D000855 ORTHO05D002321 3.6e-09 67.4 117 38.5
DCAR_006467 Daucus carota HOM05D000855 ORTHO05D002321 6.1e-09 66.6 57 59.6
EL10Ac7g17350 Beta vulgaris HOM05D000855 ORTHO05D002321 8.0e-09 66.2 83 48.2
ATR0730G109 Amborella trichopoda HOM05D000855 ORTHO05D001716 1.4e-08 65.5 64 48.4
TAR636G0979 Trochodendron aralioides HOM05D000855 ORTHO05D002321 1.8e-08 65.1 94 38.3
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 5.2e-08 63.5 191 28.3
Nn4g22754 Nelumbo nucifera HOM05D000855 ORTHO05D001716 6.8e-08 63.2 87 42.5
SGA_v2.0_scaffold62G21453 Striga asiatica HOM05D000855 ORTHO05D002321 6.8e-08 63.2 57 57.9
AUR62040020 Chenopodium quinoa HOM05D000855 ORTHO05D002321 1.2e-07 62.4 265 26.0
AUR62044639 Chenopodium quinoa HOM05D000855 ORTHO05D002321 1.2e-07 62.4 265 26.0
PSO339G4758 Papaver somniferum HOM05D000855 ORTHO05D002321 1.5e-07 62.0 66 50.0
Cc09_g02640 Coffea canephora HOM05D000855 ORTHO05D002321 2.0e-07 61.6 270 25.6
AUR62039783 Chenopodium quinoa HOM05D000855 ORTHO05D002321 2.6e-07 61.2 56 57.1
MBI14_g26603_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D002321 3.4e-07 60.8 59 55.9
Lj5g0028198 Lotus japonicus HOM05D000855 ORTHO05D002321 5.7e-07 60.1 59 54.2
Sabra06G0103400 Salix brachista HOM05D000855 ORTHO05D002321 5.7e-07 60.1 65 44.6
PSO210G3519 Papaver somniferum HOM05D000855 ORTHO05D002321 7.5e-07 59.7 59 52.5
PSO210G7506 Papaver somniferum HOM05D000855 ORTHO05D002321 7.5e-07 59.7 59 52.5
Sc07g0006250 Simmondsia chinensis HOM05D000855 ORTHO05D002321 7.5e-07 59.7 57 50.9
PSO384G0136 Papaver somniferum HOM05D000855 ORTHO05D002321 9.8e-07 59.3 66 48.5
HPP92_012068 Vanilla planifolia HOM05D000855 ORTHO05D002321 9.8e-07 59.3 55 52.7
Actinidia04696 Actinidia chinensis HOM05D000855 ORTHO05D002321 1.3e-06 58.9 59 47.5
Actinidia19715 Actinidia chinensis HOM05D000855 ORTHO05D002321 1.3e-06 58.9 59 47.5
Haze_20651 Corylus avellana HOM05D000855 ORTHO05D002321 1.3e-06 58.9 64 51.6
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 1.3e-06 58.9 57 54.4
Potri.006G131800 Populus trichocarpa HOM05D000855 ORTHO05D002321 1.3e-06 58.9 65 44.6
unitig_46.g18582 Utricularia gibba HOM05D000855 ORTHO05D002321 1.3e-06 58.9 56 51.8
ATR1159G033 Amborella trichopoda HOM05D000855 ORTHO05D002321 1.7e-06 58.5 56 53.6
TWI74G1097 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 2.9e-06 57.8 65 46.2
QL07p045288 Quercus lobata HOM05D000855 ORTHO05D002321 3.7e-06 57.4 65 47.7
CSS0000157 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D002321 8.3e-06 56.2 57 49.1
Lj3C979T7 Lonicera japonica HOM05D000855 ORTHO05D002321 8.3e-06 56.2 57 50.9
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 8.3e-06 56.2 58 50.0
TWI77G0883 Tripterygium wilfordii HOM05D000855 ORTHO05D002321 8.3e-06 56.2 56 50.0


User provided reference genes

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