Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 3.0e-179 631.7 315 100.0
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 7.4e-146 520.8 289 91.0
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 1.3e-118 430.3 292 75.3
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 8.0e-116 421.0 293 74.1
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 1.7e-110 403.3 278 74.5
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 1.9e-101 373.2 318 64.5
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 1.2e-95 354.0 307 63.5
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 1.4e-88 330.5 279 66.3
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.4e-59 233.4 296 51.0
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.2e-58 231.1 296 50.3
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.4e-56 223.4 297 50.2
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 1.1e-51 208.0 302 47.7
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 1.3e-49 201.1 271 48.0
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 3.5e-47 193.0 283 43.8
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.9e-45 187.2 227 50.2
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 2.2e-44 183.7 284 43.7
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.8e-44 183.3 294 44.2
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 6.9e-43 178.7 284 43.0
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.2e-42 177.9 293 43.3
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.5e-42 177.6 293 43.7
Thecc.02G022900 Theobroma cacao HOM05D002599 ORTHO05D012670 3.4e-42 176.4 209 53.1
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 7.6e-42 175.3 292 43.5
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.1e-40 171.4 289 42.6
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.6e-39 167.5 219 47.5
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.6e-39 167.5 219 47.0
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.1e-39 167.2 219 47.0
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.2e-34 151.4 271 42.1
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-32 144.4 132 54.5
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-32 144.1 105 64.8
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.2e-32 142.1 104 64.4
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 2.1e-31 140.6 101 63.4
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-30 137.5 122 54.1
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.8e-30 135.2 101 61.4
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 1.1e-29 134.8 286 34.6
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-29 132.5 286 34.3
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 2.2e-28 130.6 285 34.0
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 1.4e-27 127.9 101 56.4
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 2.4e-27 127.1 101 56.4
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 4.1e-27 126.3 111 57.7
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 2.0e-26 124.0 105 54.3
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.9e-26 122.5 99 59.6
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 5.0e-25 119.4 153 43.1
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-24 118.2 99 56.6
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 1.1e-24 118.2 153 43.1
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-24 116.7 99 56.6
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 3.2e-24 116.7 153 43.1
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.2e-22 109.4 103 54.4
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 2.6e-21 107.1 127 44.1
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 1.3e-20 104.8 115 47.0
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 3.7e-20 103.2 126 42.1
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 3.7e-20 103.2 127 41.7
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 1.8e-19 100.9 95 62.1
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-18 96.3 97 47.4
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-16 91.3 149 38.3
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.4e-16 88.6 103 44.7
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.7e-15 87.0 86 47.7
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.6e-15 86.7 103 42.7
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.6e-15 86.7 103 44.7
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-15 86.7 103 38.8
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-15 86.7 124 38.7
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-15 86.3 103 44.7
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-14 85.1 105 41.0
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-14 85.1 105 41.0
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-14 85.1 103 38.8
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-14 85.1 101 40.6
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 1.8e-14 84.3 100 40.0
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-14 84.3 103 38.8
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-14 84.0 101 42.6
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-14 83.6 103 43.7
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.0e-14 83.2 67 59.7
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 5.2e-14 82.8 89 44.9
Thecc.01G178700 Theobroma cacao HOM05D002599 ORTHO05D409667 6.7e-14 82.4 76 63.2
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.8e-14 82.0 100 42.0
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 8.8e-14 82.0 101 40.6
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-13 81.6 88 42.0
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-13 81.6 118 37.3
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-13 81.6 100 42.0
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-13 81.3 110 39.1
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.5e-13 81.3 101 39.6
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-13 81.3 97 43.3
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-13 80.9 101 37.6
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-13 80.9 103 36.9
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.3e-13 80.1 103 35.9
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.4e-13 79.7 127 39.4
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.4e-13 79.7 110 38.2
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 7.5e-13 79.0 102 43.1
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.7e-13 78.6 110 38.2
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-12 77.8 101 38.6
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-12 77.8 116 37.9
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-12 77.0 102 40.2
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.7e-12 76.6 138 31.9
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 6.3e-12 75.9 105 40.0
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.2e-12 75.5 130 35.4
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-12 75.5 100 40.0
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 8.2e-12 75.5 105 40.0
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-11 75.1 138 31.9
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-11 75.1 138 31.2
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-11 75.1 127 37.0
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-11 75.1 103 40.8
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-11 75.1 102 39.2
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.8e-11 74.3 106 37.7
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-11 74.3 101 41.6
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.4e-11 73.9 103 37.9
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.1e-11 73.6 102 41.2
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 3.1e-11 73.6 90 38.9
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.1e-11 73.2 85 45.9
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 4.1e-11 73.2 103 35.0
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.3e-11 72.8 108 38.0
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.3e-11 72.8 106 39.6
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 5.3e-11 72.8 135 31.9
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.0e-11 72.4 103 40.8
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 9.1e-11 72.0 90 37.8
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 2.0e-10 70.9 115 32.2
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.7e-10 70.5 103 39.8
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 2.7e-10 70.5 108 41.7
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.7e-10 70.5 107 35.5
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.5e-10 69.7 102 39.2
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 4.5e-10 69.7 104 29.8
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-10 69.3 102 38.2
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 7.7e-10 68.9 105 34.3
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-09 68.6 103 39.8
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-09 68.6 105 32.4
COL.COLO4_29532 Corchorus olitorius HOM05D002599 ORTHO05D025152 1.3e-09 68.2 105 34.3
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-09 68.2 103 35.9
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-09 68.2 103 35.0
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 1.3e-09 68.2 103 35.0
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.7e-09 67.8 103 36.9
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 2.9e-09 67.0 113 32.7
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 2.9e-09 67.0 113 32.7
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 2.9e-09 67.0 104 33.7
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.8e-09 66.6 103 40.8
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 5.0e-09 66.2 106 37.7
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 5.0e-09 66.2 110 34.5
Manes.10G122700 Manihot esculenta HOM05D002599 ORTHO05D001895 6.5e-09 65.9 106 29.2
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.5e-09 65.9 105 33.3
Sabra03G0009200 Salix brachista HOM05D002599 ORTHO05D001895 8.5e-09 65.5 103 34.0
Sabra03G0009800 Salix brachista HOM05D002599 ORTHO05D001895 8.5e-09 65.5 103 34.0
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 8.5e-09 65.5 102 31.4
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-08 65.1 105 38.1
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-08 65.1 105 38.1
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-08 65.1 102 34.3
Sabra15G0012900 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-08 65.1 106 37.7
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 1.5e-08 64.7 134 32.8
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-08 64.7 110 36.4
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.5e-08 63.9 104 36.5
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 3.2e-08 63.5 100 37.0
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 3.2e-08 63.5 87 42.5
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.2e-08 63.2 99 38.4
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-08 62.8 98 35.7
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.5e-08 62.8 98 35.7
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 7.2e-08 62.4 84 38.1
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.2e-08 62.4 103 33.0
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.4e-08 62.0 103 35.9
COL.COLO4_17744 Corchorus olitorius HOM05D002599 ORTHO05D158901 1.2e-07 61.6 64 53.1
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.2e-07 61.6 104 35.6
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-07 61.2 105 37.1
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.6e-07 61.2 104 35.6
Atru.chr4.3203 Acer truncatum HOM05D002599 ORTHO05D001895 2.7e-07 60.5 87 37.9
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 2.7e-07 60.5 106 33.0
Ciclev10003967m.g Citrus clementina HOM05D022543 ORTHO05D001895 3.6e-07 60.1 108 33.3
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.7e-07 59.7 103 30.1
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-07 59.3 101 35.6
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.1e-07 59.3 101 35.6
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.1e-07 59.3 101 35.6
Thecc.07G108700 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-07 59.3 136 27.2
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.0e-07 58.9 100 37.0
Thecc.07G108400 Theobroma cacao HOM05D002599 ORTHO05D001895 8.0e-07 58.9 104 30.8
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-06 58.5 100 31.0
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.0e-06 58.5 100 31.0
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-06 58.2 82 39.0
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-06 58.2 101 34.7
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-06 57.8 100 31.0
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-06 57.8 103 36.9
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-06 57.4 118 27.1
Potri.004G219700 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-06 57.0 106 32.1
AUR62019864 Chenopodium quinoa HOM05D002599 ORTHO05D001895 5.2e-06 56.2 101 35.6
COL.COLO4_11744 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.2e-06 56.2 58 41.4
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 6.8e-06 55.8 105 33.3


User provided reference genes

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