Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 2.1e-97 359.0 174 100.0
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 6.0e-12 75.1 71 57.7
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 7.8e-12 74.7 53 73.6
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.7e-11 73.6 52 73.1
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.7e-11 73.6 53 71.7
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.7e-11 73.6 53 71.7
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.3e-11 73.2 53 71.7
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.3e-11 73.2 53 71.7
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.0e-11 72.0 53 69.8
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 6.6e-11 71.6 53 69.8
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.1e-10 70.9 53 69.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.5e-10 70.5 53 67.9
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.5e-10 70.5 53 69.8
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.5e-10 70.5 53 67.9
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.5e-10 70.5 71 56.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.9e-10 70.1 53 67.9
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.9e-10 70.1 52 71.2
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.5e-10 69.7 53 67.9
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.3e-10 68.9 53 66.0
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 4.3e-10 68.9 53 66.0
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 4.3e-10 68.9 53 69.8
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 4.3e-10 68.9 202 32.7
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 5.6e-10 68.6 71 54.9
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.6e-10 68.6 53 67.9
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 5.6e-10 68.6 53 66.0
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 5.6e-10 68.6 71 56.3
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 5.6e-10 68.6 52 67.3
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 5.6e-10 68.6 53 67.9
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 7.3e-10 68.2 71 54.9
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 7.3e-10 68.2 53 67.9
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 9.5e-10 67.8 71 54.9
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 9.5e-10 67.8 53 67.9
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 9.5e-10 67.8 53 62.3
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 9.5e-10 67.8 71 54.9
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 9.5e-10 67.8 53 64.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.2e-09 67.4 71 53.5
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.2e-09 67.4 53 67.9
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.2e-09 67.4 53 67.9
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.2e-09 67.4 53 66.0
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.6e-09 67.0 53 66.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.6e-09 67.0 53 66.0
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 1.6e-09 67.0 53 66.0
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.6e-09 67.0 53 66.0
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.6e-09 67.0 71 54.9
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.6e-09 67.0 71 54.9
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.1e-09 66.6 53 66.0
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.8e-09 66.2 53 66.0
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.8e-09 66.2 53 64.2
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.8e-09 66.2 68 55.9
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.8e-09 66.2 68 55.9
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.8e-09 66.2 52 65.4
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.8e-09 66.2 53 66.0
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 3.6e-09 65.9 53 64.2
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 3.6e-09 65.9 71 53.5
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.6e-09 65.9 53 64.2
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 4.7e-09 65.5 53 66.0
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.7e-09 65.5 53 60.4
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 4.7e-09 65.5 71 52.1
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 6.2e-09 65.1 53 60.4
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 8.0e-09 64.7 53 58.5
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 8.0e-09 64.7 53 62.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 8.0e-09 64.7 70 52.9
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-08 64.3 53 60.4
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.1e-08 64.3 71 50.7
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.1e-08 64.3 71 53.5
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.1e-08 64.3 53 60.4
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.4e-08 63.9 53 64.2
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.4e-08 63.9 71 50.7
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.4e-08 63.9 53 62.3
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.4e-08 63.9 53 62.3
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.4e-08 63.9 71 50.7
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-08 63.5 53 64.2
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.8e-08 63.5 53 62.3
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.8e-08 63.5 71 53.5
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.8e-08 63.5 71 50.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.3e-08 63.2 53 56.6
Thecc.02G021900 Theobroma cacao HOM05D003925 ORTHO05D409199 2.3e-08 63.2 34 91.2
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.1e-08 62.8 53 60.4
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 3.1e-08 62.8 53 60.4
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 3.1e-08 62.8 71 49.3
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.1e-08 62.8 53 54.7
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 3.1e-08 62.8 53 60.4
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 3.1e-08 62.8 53 60.4
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.1e-08 62.8 53 60.4
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.1e-08 62.8 53 62.3
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.0e-08 62.4 53 56.6
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 4.0e-08 62.4 53 60.4
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 4.0e-08 62.4 48 68.8
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 4.0e-08 62.4 71 49.3
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 5.2e-08 62.0 86 40.7
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 5.2e-08 62.0 53 62.3
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 8.9e-08 61.2 53 60.4
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.5e-07 60.5 52 63.5
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.5e-07 60.5 45 68.9
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.6e-07 59.7 53 58.5
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 2.6e-07 59.7 72 51.4
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 2.6e-07 59.7 52 57.7
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 3.4e-07 59.3 47 66.0
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 4.4e-07 58.9 52 63.5
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 5.8e-07 58.5 48 62.5
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 5.8e-07 58.5 85 45.9
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 5.8e-07 58.5 66 51.5
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 5.8e-07 58.5 52 61.5
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 5.8e-07 58.5 47 63.8
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 5.8e-07 58.5 52 61.5
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 7.5e-07 58.2 52 63.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 9.8e-07 57.8 48 56.2
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.3e-06 57.4 51 56.9
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.3e-06 57.4 51 56.9
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.3e-06 57.4 51 56.9
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.7e-06 57.0 48 62.5
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.7e-06 57.0 52 59.6
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.9e-06 56.2 45 62.2
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.9e-06 56.2 52 59.6
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 3.7e-06 55.8 48 54.2
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 3.7e-06 55.8 47 57.4
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 3.7e-06 55.8 47 57.4
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 3.7e-06 55.8 48 54.2
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 3.7e-06 55.8 47 57.4
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 3.7e-06 55.8 47 57.4
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 3.7e-06 55.8 48 54.2
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 3.7e-06 55.8 47 57.4
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 3.7e-06 55.8 48 54.2
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 3.7e-06 55.8 52 59.6
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 6.4e-06 55.1 45 57.8
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 6.4e-06 55.1 47 59.6


User provided reference genes

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