Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 3.0e-240 834.7 413 100.0
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 3.0e-110 402.9 398 59.8
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 2.6e-74 283.5 208 70.2
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 2.7e-71 273.5 198 72.7
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 9.3e-64 248.4 227 59.9
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 7.9e-63 245.4 192 65.1
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.8e-35 154.5 162 47.5
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 7.0e-35 152.5 140 52.9
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.6e-34 151.4 133 54.9
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.6e-34 150.6 256 36.3
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.6e-34 150.6 135 52.6
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 2.2e-33 147.5 135 51.9
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 2.2e-33 147.5 189 43.9
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 5.0e-33 146.4 152 49.3
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 1.9e-32 144.4 153 50.3
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 4.2e-32 143.3 135 49.6
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 4.2e-32 143.3 149 51.0
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 7.2e-32 142.5 127 55.9
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 4.7e-31 139.8 209 39.7
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 8.0e-31 139.0 91 73.6
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 2.3e-30 137.5 154 44.2
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 3.0e-30 137.1 133 51.1
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 6.7e-30 136.0 130 48.5
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 1.2e-29 135.2 129 50.4
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 9.7e-29 132.1 135 44.4
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 1.3e-28 131.7 168 41.1
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.7e-28 131.3 133 46.6
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 3.7e-28 130.2 132 47.7
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.8e-28 129.8 132 48.5
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 6.3e-28 129.4 195 37.9
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 3.1e-27 127.1 135 43.0
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 3.1e-27 127.1 135 43.0
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 4.1e-27 126.7 194 38.7
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 7.0e-27 125.9 135 42.2
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 7.0e-27 125.9 164 39.0
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 1.6e-26 124.8 167 41.3
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 1.3e-25 121.7 130 43.1
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 1.3e-25 121.7 130 43.1
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 1.3e-25 121.7 136 42.6
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 2.9e-25 120.6 130 43.8
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 2.9e-25 120.6 130 43.8
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 1.6e-23 114.8 136 39.7
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 1.6e-23 114.8 132 45.5
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 4.7e-23 113.2 129 41.1
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 2.3e-22 110.9 125 42.4
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 3.0e-22 110.5 217 33.6
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 5.2e-22 109.8 129 41.1
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 2.6e-21 107.5 180 37.8
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 4.4e-21 106.7 182 36.3
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 5.7e-21 106.3 142 40.1
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 5.7e-21 106.3 129 39.5
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 2.8e-20 104.0 133 39.1
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 1.4e-19 101.7 138 41.3
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 1.8e-19 101.3 250 30.4
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 4.1e-19 100.1 137 37.2
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 4.1e-19 100.1 182 35.2
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 5.4e-19 99.8 167 37.1
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 7.0e-19 99.4 131 42.0
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 7.0e-19 99.4 131 42.0
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 7.0e-19 99.4 153 39.9
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 7.0e-19 99.4 128 39.8
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 9.1e-19 99.0 139 33.8
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 1.2e-18 98.6 126 41.3
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 1.6e-18 98.2 133 39.1
Manes.07G116400 Manihot esculenta HOM05D007656 ORTHO05D008529 1.6e-18 98.2 166 33.7
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 2.0e-18 97.8 140 37.9
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 2.7e-18 97.4 150 40.7
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-18 97.4 128 38.3
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-18 97.4 128 39.8
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 3.5e-18 97.1 131 39.7
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 4.5e-18 96.7 133 36.8
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 1.0e-17 95.5 143 36.4
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 1.0e-17 95.5 129 41.1
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-17 95.1 129 41.1
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 2.2e-17 94.4 133 37.6
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 3.8e-17 93.6 145 37.9
BcaB01g05192 Brassica carinata HOM05D000005 ORTHO05D018617 6.5e-17 92.8 137 40.1
C03p10340 Brassica napus HOM05D000005 ORTHO05D018617 1.9e-16 91.3 137 40.1
BolC3t13513H Brassica oleracea HOM05D000005 ORTHO05D018617 1.9e-16 91.3 137 40.1
BraA03t10209Z Brassica rapa HOM05D000005 ORTHO05D018617 1.9e-16 91.3 137 40.1
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 2.5e-16 90.9 131 38.2
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.2e-16 90.5 89 48.3
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 3.2e-16 90.5 155 32.9
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 7.2e-16 89.4 130 39.2
Ciclev10003101m.g Citrus clementina HOM05D007656 ORTHO05D008529 9.5e-16 89.0 134 34.3
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 9.5e-16 89.0 102 44.1
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 9.5e-16 89.0 129 33.3
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.2e-15 88.6 132 38.6
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 2.1e-15 87.8 138 35.5
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 2.1e-15 87.8 167 29.9
BraA08t32207Z Brassica rapa HOM05D000005 ORTHO05D008529 3.6e-15 87.0 131 35.9
Ciclev10003595m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.6e-15 87.0 80 52.5
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 3.6e-15 87.0 126 38.9
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 3.6e-15 87.0 138 36.2
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 8.0e-15 85.9 220 31.8
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 1.4e-14 85.1 133 34.6
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 1.4e-14 85.1 133 34.6
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 1.8e-14 84.7 129 37.2
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 5.2e-14 83.2 150 32.7
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 6.8e-14 82.8 131 35.9
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 1.2e-13 82.0 101 45.5
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 3.4e-13 80.5 134 36.6
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 3.4e-13 80.5 149 32.9
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 3.4e-13 80.5 129 34.1
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 5.7e-13 79.7 122 36.1
Sp5g20860 Schrenkiella parvula HOM05D000005 ORTHO05D000294 5.7e-13 79.7 102 41.2
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 7.5e-13 79.3 213 28.6
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 9.8e-13 79.0 122 36.1
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 9.8e-13 79.0 129 34.9
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 1.3e-12 78.6 140 34.3
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 4.9e-12 76.6 124 37.9
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 4.9e-12 76.6 131 34.4
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 8.3e-12 75.9 135 32.6
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 8.3e-12 75.9 136 33.8
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 1.1e-11 75.5 120 32.5
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 1.4e-11 75.1 236 25.4
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 3.1e-11 73.9 187 28.9
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 5.4e-11 73.2 131 36.6
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 9.2e-11 72.4 122 35.2
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 9.2e-11 72.4 136 33.8
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 3.5e-10 70.5 97 38.1
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 3.5e-10 70.5 119 33.6
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 7.8e-10 69.3 100 35.0
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 7.8e-10 69.3 131 34.4
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 2.3e-09 67.8 119 35.3
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 2.9e-09 67.4 166 30.7
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 6.6e-09 66.2 92 37.0
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 6.6e-09 66.2 136 32.4
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 6.6e-09 66.2 138 30.4
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 8.6e-09 65.9 124 35.5
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 1.1e-08 65.5 89 44.9
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.9e-08 64.7 112 35.7
Ciclev10004000m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.9e-08 64.7 83 42.2
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 2.5e-08 64.3 129 34.1
Thhalv10015989m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 4.3e-08 63.5 141 34.0
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 5.6e-08 63.2 115 33.0
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 1.6e-07 61.6 128 30.5
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 3.6e-07 60.5 188 27.1
Potri.018G145558 Populus trichocarpa HOM05D000101 ORTHO05D000089 6.1e-07 59.7 133 32.3
AUR62039079 Chenopodium quinoa HOM05D016398 ORTHO05D017825 8.0e-07 59.3 157 29.9
Sabra19G0012300 Salix brachista HOM05D002390 ORTHO05D002846 4.0e-06 57.0 158 27.8
Ciclev10023284m.g Citrus clementina HOM05D007656 ORTHO05D008529 8.9e-06 55.8 91 36.3


User provided reference genes

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