Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G020800 Theobroma cacao HOM05D001824 ORTHO05D003650 1.0e-85 320.1 166 100.0
Thecc.02G019900 Theobroma cacao HOM05D001824 ORTHO05D003650 2.4e-58 229.2 124 92.7
Thecc.02G020300 Theobroma cacao HOM05D001824 ORTHO05D003650 1.6e-54 216.5 124 87.9
Duzib248G0420 Durio zibethinus HOM05D001824 ORTHO05D003650 7.6e-41 171.0 126 68.3
COL.COLO4_17736 Corchorus olitorius HOM05D001824 ORTHO05D003650 1.7e-40 169.9 126 67.5
Gorai.002G216200 Gossypium raimondii HOM05D001824 ORTHO05D003650 1.9e-39 166.4 126 69.8
Gohir.D01G174100 Gossypium hirsutum HOM05D001824 ORTHO05D003650 7.1e-39 164.5 126 69.0
Gohir.A01G183000 Gossypium hirsutum HOM05D001824 ORTHO05D003650 9.6e-36 154.1 126 65.9
Thecc.02G020600 Theobroma cacao HOM05D001824 ORTHO05D410350 2.2e-32 142.9 85 82.4
Gohir.D12G043000 Gossypium hirsutum HOM05D001824 ORTHO05D003650 1.3e-29 133.7 127 59.8
Gorai.008G045200 Gossypium raimondii HOM05D001824 ORTHO05D003650 6.7e-29 131.3 127 59.1
Potri.004G223100 Populus trichocarpa HOM05D001824 ORTHO05D003650 2.7e-22 109.4 121 48.8
Sabra01G0169000 Salix brachista HOM05D001824 ORTHO05D003650 4.6e-22 108.6 126 48.4
Dinv19401 Davidia involucrata HOM05D001824 ORTHO05D003650 9.0e-18 94.4 127 44.9
Ciclev10001852m.g Citrus clementina HOM05D001824 ORTHO05D003650 1.5e-17 93.6 126 42.9
Atru.chr6.784 Acer truncatum HOM05D001824 ORTHO05D003650 4.5e-17 92.0 126 45.2
Manes.10G119300 Manihot esculenta HOM05D001824 ORTHO05D003650 7.7e-17 91.3 127 46.5
TAR381G1280 Trochodendron aralioides HOM05D001824 ORTHO05D003650 1.0e-16 90.9 138 44.2
Atru.chr6.813 Acer truncatum HOM05D001824 ORTHO05D003650 2.9e-16 89.4 126 44.4
GSVIVG01023264001 Vitis vinifera HOM05D001824 ORTHO05D003650 1.9e-15 86.7 127 41.7
Nn5g27813 Nelumbo nucifera HOM05D001824 ORTHO05D003650 5.5e-15 85.1 137 42.3
TWI14G1313 Tripterygium wilfordii HOM05D001824 ORTHO05D003650 1.8e-13 80.1 132 38.6
Rhsim11G0124200 Rhododendron simsii HOM05D001824 ORTHO05D003650 2.3e-13 79.7 129 40.3
vmacro01722 Vaccinium macrocarpon HOM05D001824 ORTHO05D003650 1.1e-12 77.4 129 37.2
vmacro01721 Vaccinium macrocarpon HOM05D001824 ORTHO05D003650 2.5e-12 76.3 129 36.4
CSS0009746 Camellia sinensis var. sinensis HOM05D001824 ORTHO05D003650 4.3e-12 75.5 124 37.1
Lj5C262T14 Lonicera japonica HOM05D001824 ORTHO05D003650 7.4e-12 74.7 127 40.2
CSS0044013 Camellia sinensis var. sinensis HOM05D001824 ORTHO05D003650 1.3e-11 73.9 124 37.9
Peaxi162Scf00011g00097 Petunia axillaris HOM05D001824 ORTHO05D003650 3.7e-11 72.4 125 37.6
PSO017G6536 Papaver somniferum HOM05D001824 ORTHO05D003650 4.8e-11 72.0 140 35.7
PSO170G0387 Papaver somniferum HOM05D001824 ORTHO05D003650 4.1e-10 68.9 140 34.3
Sc01g0001690 Simmondsia chinensis HOM05D001824 ORTHO05D003650 4.1e-10 68.9 127 36.2
CDE02G0718 Ceratophyllum demersum HOM05D001824 ORTHO05D003650 9.1e-10 67.8 127 37.0
THA.LOC104800038 Tarenaya hassleriana HOM05D001824 ORTHO05D003650 1.5e-09 67.0 134 36.6
Actinidia00182 Actinidia chinensis HOM05D001824 ORTHO05D003650 2.6e-09 66.2 129 35.7
Aqoxy5G02576 Aquilegia oxysepala HOM05D001824 ORTHO05D003650 3.4e-09 65.9 141 35.5
Sopen01g046070 Solanum pennellii HOM05D001824 ORTHO05D003650 3.4e-09 65.9 125 34.4
Nitab4.5_0000948g0010 Nicotiana tabacum HOM05D001824 ORTHO05D003650 4.5e-09 65.5 125 32.0
MSTRG.27857 Avicennia marina HOM05D001824 ORTHO05D003650 5.9e-09 65.1 127 33.9
Ciclev10001139m.g Citrus clementina HOM05D001824 ORTHO05D003650 5.9e-09 65.1 129 34.1
SGA_v2.0_scaffold8G04436 Striga asiatica HOM05D001824 ORTHO05D003650 1.3e-08 63.9 126 33.3
GSVIVG01034879001 Vitis vinifera HOM05D001824 ORTHO05D003650 1.7e-08 63.5 74 47.3
RcHm_v2.0_Chr6g0272221 Rosa chinensis HOM05D001824 ORTHO05D003650 2.2e-08 63.2 133 37.6
Lalb_Chr02g0141871 Lupinus albus HOM05D001824 ORTHO05D003650 2.9e-08 62.8 129 33.3
Prupe.8G053500 Prunus persica HOM05D001824 ORTHO05D003650 2.9e-08 62.8 132 31.8
Atru.chr13.1842 Acer truncatum HOM05D001824 ORTHO05D003650 3.8e-08 62.4 127 34.6
Oeu064614.1 Olea europaea HOM05D001824 ORTHO05D003650 3.8e-08 62.4 130 34.6
ClCG11G013300 Citrullus lanatus HOM05D001824 ORTHO05D003650 5.0e-08 62.0 124 33.9
Potri.013G115000 Populus trichocarpa HOM05D001824 ORTHO05D003650 5.0e-08 62.0 90 41.1
unitig_747.g21267 Utricularia gibba HOM05D001824 ORTHO05D003650 5.0e-08 62.0 75 46.7
Sp6g11600 Schrenkiella parvula HOM05D001824 ORTHO05D003650 6.5e-08 61.6 127 37.0
MBI16_g07679_MAGBIO Magnolia biondii HOM05D001824 ORTHO05D003650 8.5e-08 61.2 134 31.3
Aa31LG3G6730 Aethionema arabicum HOM05D001824 ORTHO05D003650 1.1e-07 60.8 127 34.6
Duzib116G0086 Durio zibethinus HOM05D001824 ORTHO05D003650 1.1e-07 60.8 134 34.3
Migut.N00827 Erythranthe guttata HOM05D001824 ORTHO05D003650 1.1e-07 60.8 126 32.5
QL02p034137 Quercus lobata HOM05D001824 ORTHO05D003650 1.4e-07 60.5 135 34.1
A10p08620 Brassica napus HOM05D001824 ORTHO05D003650 1.9e-07 60.1 128 38.3
BraSC37t46144Z Brassica rapa HOM05D001824 ORTHO05D003650 1.9e-07 60.1 128 39.1
Glyma.20G176900 Glycine max HOM05D001824 ORTHO05D003650 2.5e-07 59.7 133 36.1
Solyc01g103660.4 Solanum lycopersicum HOM05D001824 ORTHO05D003650 2.5e-07 59.7 125 32.0
BcaC04g20841 Brassica carinata HOM05D001824 ORTHO05D003650 3.2e-07 59.3 128 37.5
C09p38570 Brassica napus HOM05D001824 ORTHO05D003650 3.2e-07 59.3 128 37.5
Thhalv10013194m.g Eutrema salsugineum HOM05D001824 ORTHO05D003650 3.2e-07 59.3 125 32.0
Glyma.10G214900 Glycine max HOM05D001824 ORTHO05D003650 3.2e-07 59.3 133 35.3
Actinidia39009 Actinidia chinensis HOM05D001824 ORTHO05D003650 4.2e-07 58.9 129 34.1
BolC9t56714H Brassica oleracea HOM05D001824 ORTHO05D003650 4.2e-07 58.9 128 37.5
PGR042G1800 Punica granatum HOM05D001824 ORTHO05D003650 4.2e-07 58.9 132 37.9
BcaB08g35374 Brassica carinata HOM05D001824 ORTHO05D003650 5.5e-07 58.5 126 36.5
CAN.G798.56 Capsicum annuum HOM05D001824 ORTHO05D003650 5.5e-07 58.5 129 36.4
Sed0010683 Sechium edule HOM05D001824 ORTHO05D003650 5.5e-07 58.5 134 31.3
Nitab4.5_0002596g0110 Nicotiana tabacum HOM05D001824 ORTHO05D003650 7.2e-07 58.2 124 29.8
DCAR_006680 Daucus carota HOM05D001824 ORTHO05D003650 9.4e-07 57.8 77 40.3
Lj5g0019829 Lotus japonicus HOM05D001824 ORTHO05D003650 1.2e-06 57.4 135 31.9
MD05G1040100 Malus domestica HOM05D001824 ORTHO05D003650 1.2e-06 57.4 134 34.3
Carub.0008s0984 Capsella rubella HOM05D001824 ORTHO05D003650 1.6e-06 57.0 125 35.2
COL.COLO4_35563 Corchorus olitorius HOM05D001824 ORTHO05D003650 1.6e-06 57.0 128 35.2
AL8G23910 Arabidopsis lyrata HOM05D001824 ORTHO05D003650 2.1e-06 56.6 131 35.9
arahy.Tifrunner.gnm1.ann1.Y5PHEB Arachis hypogaea HOM05D001824 ORTHO05D003650 2.1e-06 56.6 128 30.5
Ca_10601_v3 Cicer arietinum L. HOM05D001824 ORTHO05D003650 2.1e-06 56.6 92 37.0
Peaxi162Scf00076g00117 Petunia axillaris HOM05D001824 ORTHO05D003650 2.1e-06 56.6 136 34.6
arahy.Tifrunner.gnm1.ann1.9S5M62 Arachis hypogaea HOM05D001824 ORTHO05D003650 2.7e-06 56.2 128 30.5
Psat6g186520 Pisum sativum HOM05D001824 ORTHO05D003650 2.7e-06 56.2 125 33.6
Ca_10600_v3 Cicer arietinum L. HOM05D001824 ORTHO05D003650 3.6e-06 55.8 55 50.9
MELO3C011823.2 Cucumis melo HOM05D001824 ORTHO05D003650 3.6e-06 55.8 126 33.3
Thecc.08G201600 Theobroma cacao HOM05D001824 ORTHO05D003650 3.6e-06 55.8 91 38.5
Lalb_Chr21g0305841 Lupinus albus HOM05D001824 ORTHO05D003650 4.7e-06 55.5 137 29.9
TPR.G1771 Trifolium pratense HOM05D001824 ORTHO05D003650 6.1e-06 55.1 129 32.6
TWI60G0971 Tripterygium wilfordii HOM05D001824 ORTHO05D003650 6.1e-06 55.1 53 54.7
AUR62004664 Chenopodium quinoa HOM05D001824 ORTHO05D003650 7.9e-06 54.7 130 30.0


User provided reference genes

Program Settings