Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 3.3e-158 561.6 275 100.0
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 5.2e-71 271.9 198 72.7
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 2.3e-66 256.5 249 57.8
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 3.8e-61 239.2 291 51.2
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 5.4e-60 235.3 284 52.1
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 4.6e-51 205.7 222 54.1
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 6.7e-34 148.7 155 49.0
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.5e-33 147.5 241 40.2
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 4.3e-33 146.0 155 48.4
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 7.4e-33 145.2 126 55.6
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 1.3e-32 144.4 92 76.1
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 6.3e-32 142.1 158 46.8
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 8.2e-32 141.7 154 48.7
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.1e-31 139.4 133 51.9
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 6.9e-31 138.7 227 40.1
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 2.6e-30 136.7 146 47.3
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 7.7e-30 135.2 130 51.5
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.0e-29 134.8 128 50.0
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 2.9e-29 133.3 121 52.9
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 6.5e-29 132.1 134 52.2
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 7.2e-28 128.6 132 46.2
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 3.6e-27 126.3 155 41.9
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 7.9e-27 125.2 133 48.1
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 1.8e-26 124.0 221 34.8
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 5.1e-26 122.5 186 37.6
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 8.8e-26 121.7 133 45.9
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 8.8e-26 121.7 133 45.9
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.1e-25 121.3 126 46.8
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 1.1e-25 121.3 156 41.7
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 1.1e-25 121.3 130 48.5
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 2.5e-25 120.2 133 45.1
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 7.4e-25 118.6 133 44.4
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 7.4e-25 118.6 133 44.4
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 7.4e-25 118.6 133 44.4
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 1.3e-24 117.9 133 44.4
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.3e-24 117.9 125 48.0
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 1.3e-24 117.9 124 46.8
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 3.7e-24 116.3 133 44.4
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 3.7e-24 116.3 174 37.4
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 8.2e-24 115.2 185 38.9
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 1.8e-23 114.0 129 43.4
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 1.8e-23 114.0 124 45.2
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 2.4e-23 113.6 139 41.0
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 9.1e-23 111.7 144 41.7
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 1.5e-22 110.9 130 45.4
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 2.0e-22 110.5 139 39.6
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 2.0e-22 110.5 130 45.4
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 3.4e-22 109.8 124 43.5
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 3.4e-22 109.8 141 44.0
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 5.9e-22 109.0 120 43.3
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 5.9e-22 109.0 167 38.9
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 7.7e-22 108.6 121 47.1
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 2.9e-21 106.7 134 40.3
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 8.5e-21 105.1 158 40.5
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 2.5e-20 103.6 123 43.9
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 4.2e-20 102.8 121 44.6
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 4.2e-20 102.8 120 43.3
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 4.2e-20 102.8 121 42.1
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 5.5e-20 102.4 121 44.6
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 1.6e-19 100.9 121 41.3
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 2.1e-19 100.5 122 36.1
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 3.6e-19 99.8 153 39.9
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 6.1e-19 99.0 119 40.3
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-18 97.8 120 40.0
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 1.8e-18 97.4 141 41.8
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 5.1e-18 95.9 137 39.4
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 1.1e-17 94.7 127 38.6
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 2.0e-17 94.0 121 41.3
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 5.7e-17 92.4 124 39.5
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 1.7e-16 90.9 122 41.0
Manes.07G116400 Manihot esculenta HOM05D007656 ORTHO05D008529 1.7e-16 90.9 140 40.7
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 2.2e-16 90.5 139 38.1
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 2.2e-16 90.5 120 39.2
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.8e-16 90.1 89 49.4
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 2.8e-16 90.1 120 40.0
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 6.3e-16 89.0 129 36.4
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 1.4e-15 87.8 125 36.8
Ciclev10003101m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.8e-15 87.4 124 37.9
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 2.4e-15 87.0 136 37.5
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 2.4e-15 87.0 121 38.0
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 3.1e-15 86.7 155 31.6
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 4.1e-15 86.3 121 37.2
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 1.6e-14 84.3 120 38.3
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 1.6e-14 84.3 167 31.1
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.0e-14 84.0 102 43.1
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 2.0e-14 84.0 124 38.7
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 2.0e-14 84.0 166 33.1
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 2.6e-14 83.6 153 36.6
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 2.6e-14 83.6 120 38.3
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 2.6e-14 83.6 148 35.8
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 2.6e-14 83.6 121 37.2
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 2.6e-14 83.6 136 32.4
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 4.5e-14 82.8 122 38.5
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 4.5e-14 82.8 122 38.5
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 4.5e-14 82.8 122 38.5
Ciclev10003595m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.5e-14 82.8 90 47.8
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 4.5e-14 82.8 106 43.4
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 5.9e-14 82.4 120 31.7
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 2.2e-13 80.5 118 33.9
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 2.9e-13 80.1 122 36.1
MD02G1277000 Malus domestica HOM05D007656 ORTHO05D008529 2.9e-13 80.1 125 36.8
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 5.0e-13 79.3 122 36.1
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 1.1e-12 78.2 121 38.0
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 1.5e-12 77.8 122 35.2
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 1.9e-12 77.4 170 31.8
BcaB01g05192 Brassica carinata HOM05D000005 ORTHO05D018617 3.2e-12 76.6 129 36.4
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 3.2e-12 76.6 119 38.7
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 3.2e-12 76.6 124 35.5
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 4.2e-12 76.3 159 31.4
Sp5g20860 Schrenkiella parvula HOM05D000005 ORTHO05D000294 7.2e-12 75.5 96 40.6
C03p10340 Brassica napus HOM05D000005 ORTHO05D018617 9.4e-12 75.1 129 36.4
BolC3t13513H Brassica oleracea HOM05D000005 ORTHO05D018617 9.4e-12 75.1 129 36.4
BraA03t10209Z Brassica rapa HOM05D000005 ORTHO05D018617 9.4e-12 75.1 129 36.4
BraA08t32207Z Brassica rapa HOM05D000005 ORTHO05D008529 1.2e-11 74.7 122 33.6
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 1.2e-11 74.7 94 39.4
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.1e-11 73.9 112 37.5
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 2.1e-11 73.9 124 34.7
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 2.7e-11 73.6 125 34.4
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 3.6e-11 73.2 122 34.4
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 3.6e-11 73.2 122 34.4
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 8.0e-11 72.0 88 39.8
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 1.0e-10 71.6 119 35.3
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 1.0e-10 71.6 124 34.7
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 2.3e-10 70.5 119 34.5
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 4.0e-10 69.7 206 28.6
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 4.0e-10 69.7 106 36.8
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 5.2e-10 69.3 104 40.4
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 5.2e-10 69.3 123 35.0
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 8.8e-10 68.6 99 39.4
Potri.006G267201 Populus trichocarpa HOM05D007656 ORTHO05D008529 2.6e-09 67.0 124 36.3
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.4e-09 66.2 90 40.0
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 1.3e-08 64.7 130 30.8
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 1.7e-08 64.3 117 34.2
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 2.2e-08 63.9 124 32.3
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 6.3e-08 62.4 158 29.1
Sabra19G0012300 Salix brachista HOM05D002390 ORTHO05D002846 1.1e-07 61.6 101 33.7
AUR62039079 Chenopodium quinoa HOM05D016398 ORTHO05D017825 1.8e-07 60.8 134 30.6
Ciclev10004000m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.8e-07 60.8 79 44.3
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 1.8e-07 60.8 126 31.0
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 3.1e-07 60.1 120 30.8


User provided reference genes

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