Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 2.0e-43 178.7 90 100.0
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 1.9e-38 162.2 90 90.0
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 2.5e-38 161.8 90 88.9
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 1.2e-37 159.5 90 87.8
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 1.6e-37 159.1 86 91.9
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 2.1e-37 158.7 86 91.9
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 8.0e-37 156.8 86 91.9
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 1.1e-36 156.4 86 87.2
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 1.4e-36 156.0 86 88.4
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 1.8e-36 155.6 90 82.2
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 2.3e-36 155.2 90 83.3
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 3.1e-36 154.8 90 82.2
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 6.8e-36 153.7 90 81.1
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 6.8e-36 153.7 86 87.2
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 6.8e-36 153.7 90 84.4
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 8.9e-36 153.3 90 81.1
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 80.0
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 80.0
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 80.0
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 81.1
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 2.0e-35 152.1 90 82.2
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 81.1
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 3.4e-35 151.4 90 80.0
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 4.4e-35 151.0 90 80.0
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 4.4e-35 151.0 90 82.2
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 9.8e-35 149.8 90 77.8
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 1.3e-34 149.4 91 83.5
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 1.3e-34 149.4 90 78.9
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 1.7e-34 149.1 90 78.9
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 78.9
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 78.9
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 2.9e-34 148.3 86 79.1
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 2.9e-34 148.3 86 79.1
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 4.9e-34 147.5 88 78.4
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 80.0
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 75.6
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 6.4e-34 147.1 90 80.0
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 6.4e-34 147.1 86 79.1
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 1.1e-33 146.4 90 76.7
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 76.7
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 1.4e-33 146.0 90 77.8
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 78.9
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 4.1e-33 144.4 90 75.6
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 4.1e-33 144.4 88 77.3
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 4.1e-33 144.4 88 79.5
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 74.4
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 7.0e-33 143.7 88 76.1
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 9.2e-33 143.3 88 75.0
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 9.2e-33 143.3 86 79.1
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 75.6
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 72.2
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 1.6e-32 142.5 90 73.3
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 1.6e-32 142.5 88 76.1
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 73.3
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 76.7
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 3.5e-32 141.4 90 76.7
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 3.5e-32 141.4 90 72.2
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 4.6e-32 141.0 97 72.2
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 4.6e-32 141.0 86 77.9
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 6.0e-32 140.6 86 76.7
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 72.2
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 72.2
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 73.3
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 73.3
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 7.8e-32 140.2 90 71.1
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 7.8e-32 140.2 90 73.3
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 7.8e-32 140.2 87 77.0
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 1.0e-31 139.8 91 75.8
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 1.0e-31 139.8 91 75.8
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 1.0e-31 139.8 89 76.4
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 1.7e-31 139.0 89 73.0
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 1.7e-31 139.0 87 74.7
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 2.3e-31 138.7 91 75.8
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 2.3e-31 138.7 90 72.2
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 72.2
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 3.0e-31 138.3 99 67.7
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 72.2
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 75.6
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.9e-31 137.9 84 78.6
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 5.1e-31 137.5 90 72.2
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 5.1e-31 137.5 90 71.1
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 6.6e-31 137.1 84 76.2
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 6.6e-31 137.1 87 74.7
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 1.5e-30 136.0 86 73.3
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 1.5e-30 136.0 88 75.0
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 1.9e-30 135.6 90 71.1
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 2.5e-30 135.2 90 68.9
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 5.6e-30 134.0 84 78.6
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 5.6e-30 134.0 90 68.9
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 5.6e-30 134.0 90 71.1
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 7.3e-30 133.7 86 70.9
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 7.3e-30 133.7 69 95.7
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 7.3e-30 133.7 90 68.9
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 9.5e-30 133.3 90 68.9
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 1.6e-29 132.5 86 73.3
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 3.6e-29 131.3 77 79.2
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 4.7e-29 131.0 90 70.0
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 1.4e-28 129.4 70 85.7
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 1.8e-28 129.0 70 84.3
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 2.3e-28 128.6 94 68.1
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 4.0e-28 127.9 97 68.0
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 4.4e-27 124.4 70 81.4
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 9.9e-27 123.2 86 67.4
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 1.3e-26 122.9 70 80.0
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 6.4e-26 120.6 120 52.5
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 1.1e-25 119.8 70 81.4
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 2.1e-24 115.5 79 69.6
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 1.0e-23 113.2 62 82.3
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 2.3e-23 112.1 68 76.5
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 3.0e-23 111.7 66 78.8
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 1.5e-22 109.4 71 76.1
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 6.2e-21 104.0 57 89.5
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 1.8e-20 102.4 69 68.1
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 3.1e-20 101.7 60 81.7
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 5.2e-20 100.9 85 61.2
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 2.6e-19 98.6 58 79.3
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 3.4e-19 98.2 80 63.8
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 1.7e-18 95.9 89 55.1
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 1.3e-15 86.3 51 84.3
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 3.9e-15 84.7 93 49.5
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 4.3e-14 81.3 90 51.1
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 2.6e-11 72.0 53 69.8
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 2.1e-08 62.4 47 61.7
arahy.Tifrunner.gnm1.ann1.DI5ISS Arachis hypogaea HOM05D006090 ORTHO05D038896 4.6e-08 61.2 41 70.7
arahy.Tifrunner.gnm1.ann1.3U8U6D Arachis hypogaea HOM05D054567 ORTHO05D007600 2.3e-07 58.9 33 75.8
Carub.0003s0674 Capsella rubella HOM05D006090 ORTHO05D007600 3.9e-07 58.2 35 77.1


User provided reference genes

Program Settings