Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 3243.0 1721 100.0
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2949.5 1722 89.7
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2862.0 1722 88.4
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2854.3 1722 86.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2832.0 1722 87.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2785.0 1731 84.2
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2640.5 1724 79.1
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2556.6 1738 76.1
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2532.7 1723 76.0
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2526.1 1727 77.1
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2523.8 1723 75.8
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2522.3 1721 75.5
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2511.5 1719 75.0
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2510.7 1726 75.1
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2502.2 1734 76.0
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2492.2 1724 74.9
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2483.8 1725 74.4
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2479.1 1719 73.8
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2476.0 1723 73.2
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2462.2 1728 74.7
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2459.1 1731 74.5
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2451.8 1705 72.9
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 2444.8 1721 76.4
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2434.4 1731 74.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2434.1 1723 72.5
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2433.7 1724 72.9
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2432.9 1727 73.2
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2429.4 1740 72.6
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2419.0 1727 72.3
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2411.7 1731 73.4
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2402.1 1731 73.1
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2395.5 1732 72.4
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2385.5 1725 73.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2374.0 1722 70.9
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2373.6 1734 71.2
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2362.8 1735 70.0
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2360.9 1746 69.5
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2360.5 1784 71.8
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2339.7 1718 70.3
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2335.5 1726 70.6
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2332.0 1747 69.7
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2326.2 1723 72.2
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2323.9 1719 69.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2318.9 1727 68.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2317.3 1727 69.0
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2315.8 1711 69.8
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2315.0 1716 68.9
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2311.6 1717 68.9
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2311.6 1740 68.7
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2311.6 1702 70.6
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2306.6 1734 67.7
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2304.2 1711 70.2
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2302.7 1721 70.0
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2300.0 1751 67.6
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2299.2 1704 70.0
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2295.0 1744 68.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2292.3 1718 69.0
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2291.2 1714 69.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2286.1 1774 69.6
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2284.2 1737 69.1
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2283.1 1881 67.0
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2279.2 1799 66.8
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2278.1 1718 68.7
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2276.1 1709 69.7
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2265.3 1711 68.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2263.8 1729 68.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2249.2 1725 68.2
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2224.1 1777 66.6
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2221.8 1414 77.5
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2205.6 1714 68.0
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2204.9 1738 65.9
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2201.4 1730 66.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2199.9 1719 67.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2176.7 1688 69.3
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2164.0 1706 65.3
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2156.7 1726 65.8
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2150.6 1726 65.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2123.6 1743 65.7
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2119.0 1730 66.0
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2111.6 1692 65.2
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2104.3 1649 66.2
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2089.7 2142 56.0
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2063.5 1704 65.1
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2050.8 1296 75.8
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2042.7 1292 75.9
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 2017.7 1161 83.8
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1971.1 1459 69.5
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1969.5 1695 61.8
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1962.6 1715 59.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1936.8 1669 61.2
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1897.1 1826 57.9
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1768.1 1739 59.0
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1764.6 1451 67.3
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1748.4 1476 59.6
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1706.0 1700 52.4
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1696.8 1700 53.9
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1683.7 1699 53.5
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1650.6 1045 76.6
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1644.8 1690 51.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1548.9 936 80.4
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1523.8 1084 67.2
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1492.6 1141 69.9
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1424.8 1158 67.4
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1397.9 1105 69.4
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1387.1 1371 57.6
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1192.9 910 65.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1156.7 940 67.2
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.6e-301 1039.6 616 81.7
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.5e-296 1023.1 742 67.9
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 8.7e-273 944.9 682 65.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.7e-263 912.9 601 73.4
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 6.3e-255 885.6 552 78.8
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.9e-253 879.0 791 61.3
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.2e-237 828.2 1603 35.3
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.3e-207 728.4 847 42.0
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 3.9e-196 690.3 427 78.5
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 4.0e-161 573.9 329 84.2
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.2e-157 562.4 376 72.6
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 7.4e-155 553.1 611 57.1
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 2.5e-134 485.0 637 54.0
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.2e-126 457.6 891 33.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 3.8e-119 434.5 696 39.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.4e-113 415.2 246 77.6
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 4.1e-113 414.5 241 83.8
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 7.7e-112 410.2 335 66.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 8.3e-106 390.2 458 43.4
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.0e-105 387.1 535 55.1
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.3e-95 355.5 214 74.8
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.3e-82 310.5 190 81.1
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.8e-76 292.7 176 75.0
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 7.8e-72 277.3 405 50.6
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 1.4e-60 240.0 152 73.7
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 2.0e-59 236.1 176 63.1
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 6.2e-53 214.5 443 49.0
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.7e-50 206.5 203 46.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.3e-47 196.8 115 83.5
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.6e-45 189.9 130 61.5
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.2e-42 179.5 98 92.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.0e-39 170.6 130 61.5
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 2.4e-36 159.5 169 52.1
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 6.9e-36 157.9 206 47.1
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 1.0e-31 144.1 287 40.8
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 6.7e-31 141.4 123 56.1
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 7.4e-30 137.9 227 46.7
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.2e-27 130.6 111 60.4
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 4.2e-25 122.1 93 68.8
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 9.4e-25 120.9 63 93.7
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.6e-24 120.2 69 79.7
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.6e-24 120.2 73 82.2
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 3.0e-23 115.9 289 38.8
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 6.7e-23 114.8 208 37.5
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.1e-22 114.0 87 65.5
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.7e-22 111.7 61 82.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 3.1e-20 105.9 75 76.0
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.0e-19 103.2 76 63.2
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.6e-19 102.8 98 52.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 3.2e-17 95.9 57 86.0
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 3.0e-15 89.4 58 67.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.9e-15 89.0 51 76.5
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 5.7e-14 85.1 94 51.1
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.8e-13 82.8 50 84.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.8e-12 80.1 52 76.9
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 2.4e-12 79.7 44 75.0
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 3.5e-11 75.9 97 43.3
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.3e-10 73.9 106 45.3
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.7e-10 73.6 291 34.0
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.4e-09 70.5 73 47.9
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 7.2e-09 68.2 60 55.0
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 7.2e-09 68.2 70 48.6
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 8.0e-08 64.7 166 29.5
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.9e-07 62.4 68 50.0
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-07 62.0 109 31.2
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 1.5e-06 60.5 157 29.9
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 9.7e-06 57.8 44 59.1


User provided reference genes

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