Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 8.9e-198 693.3 335 100.0
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 5.2e-182 641.0 335 91.6
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.6e-178 629.4 333 90.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.7e-177 625.9 335 89.3
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.7e-175 617.8 335 88.1
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 4.7e-175 617.8 335 88.1
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 8.9e-174 613.6 335 87.8
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 2.4e-171 605.5 335 86.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 3.3e-168 595.1 336 84.5
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 7.3e-168 594.0 335 85.1
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.6e-167 592.8 337 84.9
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 3.1e-166 588.6 335 83.6
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.2e-165 586.6 335 84.8
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 2.6e-165 585.5 335 82.1
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 4.5e-165 584.7 335 84.5
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 4.5e-165 584.7 336 82.7
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 8.4e-164 580.5 336 81.8
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 1.2e-162 576.6 337 82.2
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 8.7e-161 570.5 337 81.3
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 3.3e-160 568.5 337 80.1
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 3.3e-160 568.5 335 81.2
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 4.3e-160 568.2 337 81.3
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 5.6e-160 567.8 332 81.9
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 7.4e-160 567.4 335 81.5
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 9.6e-160 567.0 337 81.0
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.3e-159 566.6 337 81.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.6e-159 566.2 335 80.3
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 4.8e-159 564.7 337 80.4
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 6.2e-159 564.3 337 81.0
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.4e-158 563.1 335 80.3
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.4e-158 563.1 335 80.3
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.8e-158 562.8 338 79.0
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.4e-158 562.4 336 81.5
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.4e-158 562.4 337 81.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 3.1e-158 562.0 335 79.1
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 6.9e-158 560.8 337 80.1
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 6.9e-158 560.8 337 81.6
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 4.5e-157 558.1 335 79.4
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 7.6e-157 557.4 336 79.2
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.2e-156 555.8 337 78.9
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.9e-156 555.4 347 79.8
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.9e-156 555.4 336 78.6
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 2.9e-156 555.4 334 79.3
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 3.8e-156 555.1 332 80.1
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 3.2e-155 552.0 337 79.2
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 2.7e-154 548.9 339 77.6
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 3.5e-154 548.5 336 79.2
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 6.0e-154 547.7 337 78.0
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.3e-153 546.6 334 78.4
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.6e-152 541.2 337 76.9
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 2.1e-151 539.3 334 77.2
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 3.7e-151 538.5 328 79.6
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 6.2e-151 537.7 337 77.4
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 8.1e-151 537.3 331 77.0
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.4e-150 536.6 337 76.3
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.8e-150 536.2 338 78.1
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.2e-149 533.5 337 76.3
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.2e-149 533.5 337 76.3
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.5e-149 533.1 337 77.2
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 4.5e-149 531.6 336 74.7
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 5.8e-149 531.2 337 74.5
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 5.8e-149 531.2 336 73.8
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.6e-149 530.8 329 76.3
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 4.9e-148 528.1 337 75.7
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 8.4e-148 527.3 337 73.9
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 8.4e-148 527.3 341 74.5
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.4e-147 526.6 336 74.1
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.5e-147 525.8 336 73.8
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 2.5e-147 525.8 333 74.5
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 3.2e-147 525.4 337 74.8
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 4.2e-147 525.0 333 74.5
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 4.2e-147 525.0 337 75.4
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.3e-145 519.2 334 75.7
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.0e-145 518.8 329 76.0
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 3.9e-145 518.5 344 72.4
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.5e-144 516.5 332 73.5
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 2.5e-144 515.8 335 74.0
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 5.7e-144 514.6 337 72.4
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.8e-143 512.3 330 73.9
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.1e-142 508.4 336 72.0
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.3e-142 508.1 338 72.2
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.5e-141 506.5 336 71.1
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 2.6e-141 505.8 337 72.7
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.0e-140 503.8 329 75.4
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.4e-139 500.0 329 71.7
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.5e-139 499.2 336 75.0
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 3.2e-139 498.8 336 72.3
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 4.2e-139 498.4 339 70.8
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 5.5e-139 498.0 334 74.6
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 9.3e-139 497.3 330 71.5
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.2e-138 496.9 335 70.1
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.0e-137 493.8 337 69.7
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 2.5e-136 489.2 312 74.4
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 3.3e-136 488.8 336 71.1
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.8e-134 483.0 334 69.8
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.8e-134 483.0 334 69.2
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 7.7e-133 477.6 327 68.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 6.5e-132 474.6 325 69.8
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.4e-131 473.4 337 66.8
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.6e-130 469.9 333 68.5
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.3e-129 466.1 335 66.3
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 6.7e-129 464.5 329 68.4
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.1e-128 463.8 324 69.1
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.5e-128 463.4 324 68.8
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 4.4e-128 461.8 333 66.7
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 2.6e-125 452.6 336 65.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.3e-124 450.3 289 76.8
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 6.5e-124 448.0 322 68.3
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 7.2e-123 444.5 326 66.9
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.2e-122 443.7 325 66.2
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 3.6e-122 442.2 328 66.2
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 6.1e-122 441.4 326 66.3
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 4.4e-120 435.3 314 65.3
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.1e-118 430.6 333 64.9
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.8e-118 429.9 311 66.9
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 9.1e-118 427.6 377 58.4
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 5.9e-117 424.9 289 70.6
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.0e-113 412.5 257 75.9
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 7.0e-110 401.4 261 75.1
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.5e-100 368.2 208 86.1
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 1.9e-99 366.7 216 82.4
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 8.8e-97 357.8 384 52.1
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 3.5e-93 345.9 313 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 2.3e-92 343.2 338 51.8
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.5e-88 330.5 344 51.7
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.0e-88 330.1 275 59.3
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.3e-87 327.4 348 49.4
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.8e-86 323.6 342 51.2
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 5.6e-83 312.0 249 63.9
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 6.8e-81 305.1 404 43.3
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 3.7e-79 299.3 276 58.0
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 5.4e-78 295.4 192 71.4
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 1.2e-66 257.7 184 67.4
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.3e-60 237.7 185 58.4
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 4.7e-58 229.2 155 69.7
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.1e-54 218.0 335 42.7
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 5.1e-52 209.1 376 35.1
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.7e-47 194.1 143 62.9
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.1e-46 191.4 156 62.2
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 9.3e-46 188.3 247 43.3
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 2.7e-45 186.8 134 67.2
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 7.4e-43 178.7 139 64.0
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 7.4e-43 178.7 139 64.0
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 5.6e-35 152.5 81 87.7
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 8.2e-34 148.7 90 74.4
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 9.0e-33 145.2 109 69.7
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 7.6e-32 142.1 152 49.3
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 2.7e-21 107.1 407 25.8
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 4.8e-18 96.3 67 70.1
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 4.5e-16 89.7 76 52.6
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 1.0e-15 88.6 67 67.2
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.9e-12 76.6 39 87.2
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 2.0e-11 74.3 58 60.3
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 8.2e-10 68.9 55 69.1
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.8e-09 67.8 71 47.9
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 6.5e-07 59.3 34 76.5


User provided reference genes

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