Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 1.7e-64 249.2 130 100.0
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 9.8e-60 233.4 130 92.3
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 4.8e-59 231.1 130 90.8
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.8e-58 229.2 130 90.0
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 9.1e-58 226.9 130 88.5
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 9.1e-58 226.9 131 90.8
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 9.1e-58 226.9 131 90.8
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 3.5e-57 224.9 130 89.2
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 7.7e-57 223.8 131 90.1
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 7.7e-57 223.8 130 87.7
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.0e-56 223.4 130 88.5
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 1.7e-56 222.6 131 89.3
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 1.7e-56 222.6 130 87.7
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 1.7e-56 222.6 130 87.7
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 3.8e-56 221.5 130 86.2
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 3.8e-56 221.5 130 86.9
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.1e-55 219.9 128 86.7
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 1.1e-55 219.9 130 85.4
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.5e-55 219.5 130 85.4
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.5e-55 219.5 131 86.3
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.5e-55 219.5 130 86.9
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 2.5e-55 218.8 130 88.5
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.5e-55 218.8 131 86.3
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 3.3e-55 218.4 130 86.2
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 87.0
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 7.2e-55 217.2 131 86.3
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 7.2e-55 217.2 131 84.7
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 7.2e-55 217.2 131 85.5
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 7.2e-55 217.2 130 83.8
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 85.5
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 9.5e-55 216.9 131 84.7
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 1.2e-54 216.5 131 86.3
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.2e-54 216.5 129 85.3
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.6e-54 216.1 131 86.3
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.6e-54 216.1 133 86.5
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 2.8e-54 215.3 131 85.5
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 2.8e-54 215.3 131 85.5
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 2.8e-54 215.3 131 85.5
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 2.8e-54 215.3 131 85.5
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 2.8e-54 215.3 131 84.7
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 3.6e-54 214.9 130 86.2
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 3.6e-54 214.9 130 84.6
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 85.5
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 4.7e-54 214.5 131 84.0
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 6.1e-54 214.2 132 84.8
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 6.1e-54 214.2 129 84.5
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 8.0e-54 213.8 132 85.6
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 8.0e-54 213.8 132 85.6
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 8.0e-54 213.8 132 85.6
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 8.0e-54 213.8 132 85.6
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 8.0e-54 213.8 131 86.3
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.0e-53 213.4 133 86.5
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.0e-53 213.4 129 86.8
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 1.4e-53 213.0 132 84.8
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.4e-53 213.0 131 84.0
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.4e-53 213.0 131 84.0
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 84.8
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.8e-53 212.6 133 87.2
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 2.3e-53 212.2 132 84.8
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 84.0
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 84.0
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.0e-53 211.8 129 85.3
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.0e-53 211.8 129 86.0
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 3.0e-53 211.8 131 82.4
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 82.4
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 5.2e-53 211.1 132 83.3
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 5.2e-53 211.1 132 83.3
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 5.2e-53 211.1 131 82.4
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 5.2e-53 211.1 131 82.4
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 80.8
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 8.9e-53 210.3 131 81.7
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 2.0e-52 209.1 129 84.5
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.0e-52 209.1 129 84.5
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.0e-52 209.1 130 82.3
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 2.6e-52 208.8 131 84.7
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 3.4e-52 208.4 130 80.0
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 3.4e-52 208.4 131 80.9
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.4e-52 208.0 131 81.7
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.4e-52 208.0 131 81.7
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 5.7e-52 207.6 131 82.4
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 7.5e-52 207.2 131 80.9
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 9.8e-52 206.8 132 81.8
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 9.8e-52 206.8 127 85.8
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.3e-51 206.5 129 81.4
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 80.9
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 81.7
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 2.8e-51 205.3 131 84.0
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 3.7e-51 204.9 131 84.0
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 3.7e-51 204.9 131 79.4
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 6.3e-51 204.1 133 80.5
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 8.3e-51 203.8 133 78.2
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 8.3e-51 203.8 131 83.2
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 8.3e-51 203.8 131 80.2
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 8.3e-51 203.8 131 80.9
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.4e-50 203.0 131 81.7
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.8e-50 202.6 133 82.7
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 2.4e-50 202.2 129 79.1
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 2.4e-50 202.2 131 78.6
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 2.4e-50 202.2 129 80.6
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 2.4e-50 202.2 129 80.6
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 5.4e-50 201.1 131 79.4
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 7.0e-50 200.7 131 78.6
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 1.6e-49 199.5 129 79.1
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 2.7e-49 198.7 129 76.7
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 2.7e-49 198.7 132 79.5
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 2.7e-49 198.7 131 79.4
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 3.5e-49 198.4 123 80.5
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 3.5e-49 198.4 133 81.2
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 4.5e-49 198.0 132 77.3
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.0e-48 196.8 130 76.9
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.3e-48 196.4 129 76.0
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 2.9e-48 195.3 130 77.7
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 5.0e-48 194.5 129 77.5
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 6.6e-48 194.1 129 77.5
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 2.5e-47 192.2 132 76.5
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 3.3e-47 191.8 133 75.9
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 4.3e-47 191.4 131 76.3
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 2.8e-46 188.7 132 74.2
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.6e-46 188.3 177 62.7
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 8.0e-46 187.2 130 73.8
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 5.2e-45 184.5 162 62.3
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 8.9e-45 183.7 130 74.6
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 8.9e-45 183.7 136 73.5
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.3e-43 179.9 129 72.1
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 2.9e-43 178.7 128 74.2
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 6.4e-43 177.6 102 86.3
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 1.1e-42 176.8 133 72.2
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 1.2e-41 173.3 131 73.3
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 3.5e-41 171.8 126 71.4
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 2.3e-37 159.1 132 67.4
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.1e-37 158.7 133 65.4
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 8.9e-37 157.1 135 67.4
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.2e-36 156.8 134 66.4
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 4.4e-36 154.8 137 62.0
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.9e-35 152.1 128 70.3
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 4.1e-34 148.3 125 66.4
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.2e-30 136.7 88 78.4
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 3.6e-30 135.2 119 63.0
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 8.3e-27 124.0 116 60.3
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 1.7e-24 116.3 78 75.6
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 1.7e-19 99.8 106 51.9
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.1e-17 92.8 64 71.9
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 3.1e-13 79.0 48 83.3
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 1.6e-09 66.6 78 46.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 6.0e-09 64.7 91 41.8


User provided reference genes

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