Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.4e-204 716.1 366 100.0
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.2e-184 649.8 364 92.0
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 2.4e-172 609.0 366 86.6
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.3e-170 602.4 392 81.4
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 5.0e-170 601.3 366 86.1
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 6.2e-160 567.8 342 85.7
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 1.4e-159 566.6 342 85.7
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 2.3e-154 549.3 368 79.1
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 3.3e-153 545.4 368 78.5
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 5.6e-153 544.7 354 79.4
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.6e-152 543.1 376 76.6
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 2.9e-149 532.3 377 75.6
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.2e-147 526.9 376 75.0
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 4.3e-145 518.5 375 75.2
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 7.3e-145 517.7 355 78.0
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.4e-143 513.5 376 75.3
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 5.2e-143 511.5 382 75.7
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 8.9e-143 510.8 355 76.3
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 8.9e-143 510.8 376 74.2
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 4.4e-142 508.4 424 67.5
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.2e-141 506.1 377 72.4
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 3.7e-141 505.4 376 72.6
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.9e-140 503.1 376 73.1
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 4.1e-140 501.9 376 72.9
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 9.2e-140 500.7 376 72.9
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.1e-139 499.6 388 70.1
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 7.8e-139 497.7 380 69.5
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.0e-138 497.3 349 74.8
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.7e-138 496.5 376 72.3
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 3.9e-138 495.4 380 71.1
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 5.1e-138 495.0 376 71.3
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 6.6e-138 494.6 354 74.3
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 8.6e-138 494.2 368 72.8
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 8.6e-138 494.2 377 69.0
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.5e-137 493.4 416 68.3
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 2.1e-136 489.6 380 70.3
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-135 487.3 378 70.4
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 3.1e-135 485.7 368 71.7
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 5.2e-135 485.0 376 70.7
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.2e-134 483.8 388 67.8
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 7.6e-134 481.1 356 71.6
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 8.4e-133 477.6 369 71.3
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.0e-130 470.7 374 69.8
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.3e-130 470.3 348 72.1
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 5.1e-130 468.4 374 67.9
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 8.7e-130 467.6 377 67.9
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.1e-129 467.2 377 69.2
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 7.3e-129 464.5 376 67.8
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 7.3e-129 464.5 357 68.3
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 9.6e-129 464.2 375 68.0
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.3e-128 463.8 354 71.2
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 1.6e-128 463.4 368 67.9
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 2.1e-128 463.0 373 68.6
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 1.8e-127 459.9 382 68.6
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 4.0e-127 458.8 353 70.3
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 4.0e-127 458.8 355 69.0
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 5.3e-127 458.4 350 69.7
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 6.9e-127 458.0 364 71.2
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 6.9e-127 458.0 443 60.9
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.2e-126 457.2 391 65.5
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.6e-126 456.1 350 69.4
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 2.6e-126 456.1 377 65.8
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 3.4e-126 455.7 414 63.0
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 2.2e-125 453.0 378 66.7
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 6.4e-125 451.4 370 68.6
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.9e-124 449.9 380 65.8
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 7.1e-124 448.0 371 67.7
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 3.5e-123 445.7 371 67.4
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 7.9e-123 444.5 425 60.2
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.0e-122 444.1 352 68.2
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 1.3e-122 443.7 379 68.6
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 3.0e-122 442.6 372 66.4
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 8.7e-122 441.0 350 67.7
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 1.1e-121 440.7 387 65.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 4.3e-121 438.7 372 66.1
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 5.6e-121 438.3 376 63.6
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.1e-120 436.4 378 65.6
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 3.6e-120 435.6 372 67.2
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 4.8e-120 435.3 376 65.2
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 8.1e-120 434.5 352 66.5
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 5.3e-119 431.8 354 65.0
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 3.4e-118 429.1 371 66.0
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 7.6e-118 427.9 357 64.7
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.2e-115 420.6 355 65.4
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 4.6e-115 418.7 359 66.6
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 4.6e-115 418.7 373 65.4
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.9e-115 417.9 373 64.6
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.8e-114 416.8 326 71.2
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.3e-114 416.4 371 64.7
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 3.3e-113 412.5 369 63.1
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 7.4e-113 411.4 357 63.0
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.7e-112 409.1 351 62.7
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 6.9e-111 404.8 373 63.0
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 3.4e-110 402.5 364 61.3
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.3e-109 400.6 362 63.8
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 4.9e-109 398.7 357 63.6
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 6.5e-109 398.3 368 62.2
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 2.3e-106 389.8 272 74.6
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 3.0e-106 389.4 382 60.2
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 6.7e-106 388.3 369 61.8
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 1.3e-104 384.0 355 61.1
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 1.8e-103 380.2 372 61.3
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.4e-103 379.8 353 61.5
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.1e-103 379.0 312 67.6
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.3e-103 378.6 355 62.0
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 6.9e-103 378.3 348 62.4
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 2.2e-101 373.2 372 60.5
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 2.2e-101 373.2 372 60.5
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.9e-101 372.9 351 61.3
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 3.8e-101 372.5 275 73.8
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 7.2e-100 368.2 383 58.0
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 1.6e-99 367.1 347 60.8
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.3e-98 364.0 414 54.3
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 7.4e-97 358.2 501 47.5
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.6e-96 357.1 320 63.1
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 4.8e-96 355.5 422 52.8
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.5e-94 350.5 348 59.5
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.7e-93 347.1 368 56.0
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.9e-92 343.6 347 58.8
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.9e-92 343.6 354 57.6
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 9.4e-92 341.3 370 58.6
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.0e-90 337.8 390 52.8
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 2.8e-88 329.7 343 60.9
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.4e-87 326.6 481 47.6
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 3.1e-87 326.2 274 63.5
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 9.4e-84 314.7 272 66.5
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 4.7e-83 312.4 398 48.7
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 3.6e-75 286.2 412 46.6
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.4e-71 273.5 403 45.7
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.0e-69 268.1 167 80.2
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.6e-67 260.8 249 62.7
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.4e-65 252.7 303 55.1
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 4.4e-65 252.7 303 55.1
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 5.4e-63 245.7 378 45.5
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.0e-58 231.5 188 72.9
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.2e-54 218.0 316 46.2
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 3.3e-52 209.9 687 30.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.8e-51 206.8 307 49.2
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 4.7e-51 206.1 98 96.9
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 1.5e-49 201.1 212 58.0
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.4e-48 195.7 99 92.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 6.4e-48 195.7 99 92.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 7.8e-46 188.7 265 45.3
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 1.7e-45 187.6 221 53.8
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.1e-43 180.6 217 51.2
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.4e-41 172.9 93 88.2
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 2.0e-33 147.5 178 52.2
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 9.8e-33 145.2 105 73.3
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.9e-28 131.0 358 32.7
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 9.5e-28 128.6 71 81.7
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.3e-26 124.0 84 75.0
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.9e-23 114.4 94 56.4
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 5.4e-23 112.8 83 56.6
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.8e-22 109.0 65 78.5
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 9.6e-20 102.1 76 63.2
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 3.4e-17 93.6 63 71.4
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 8.4e-16 89.0 297 33.0
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 6.9e-10 69.3 100 48.0
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 7.6e-09 65.9 74 50.0
TWI15G0530 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.9e-08 63.2 47 68.1


User provided reference genes

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