Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.5e-192 676.0 333 100.0
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.2e-159 566.6 332 83.4
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.2e-159 566.6 332 83.7
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 3.6e-159 565.1 332 83.4
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 4.3e-152 541.6 355 78.6
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 9.6e-152 540.4 331 78.5
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 4.2e-147 525.0 325 77.8
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 4.2e-147 525.0 330 77.0
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 2.1e-146 522.7 333 75.1
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 3.5e-146 521.9 333 76.6
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.0e-145 520.4 331 75.2
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.1e-144 516.9 330 74.8
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 8.1e-143 510.8 333 73.9
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 2.4e-142 509.2 332 73.8
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.1e-142 508.8 333 73.6
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 6.4e-140 501.1 333 72.7
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.3e-137 492.7 333 72.7
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.0e-137 492.3 332 72.0
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 3.9e-137 491.9 332 72.3
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.1e-137 491.5 332 72.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 6.7e-137 491.1 349 69.1
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 8.7e-137 490.7 332 72.0
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.5e-136 490.0 332 71.7
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 3.3e-136 488.8 330 72.4
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 3.3e-136 488.8 333 71.8
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.3e-136 488.8 333 68.2
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.3e-136 488.8 363 66.7
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 4.3e-136 488.4 327 71.6
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 5.6e-136 488.0 330 73.0
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.6e-136 488.0 332 71.4
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 9.6e-136 487.3 330 72.1
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 2.1e-135 486.1 330 72.7
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 2.1e-135 486.1 330 72.7
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.8e-135 485.7 332 71.4
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.1e-134 483.8 335 69.9
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 1.8e-134 483.0 330 72.1
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 1.8e-134 483.0 329 68.7
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.4e-134 482.6 328 67.4
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.4e-134 482.6 365 66.0
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 3.1e-134 482.3 330 72.1
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.2e-133 480.3 330 71.8
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.5e-133 479.9 330 71.5
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 2.6e-133 479.2 330 71.5
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 3.4e-133 478.8 330 70.9
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.4e-133 478.8 333 69.4
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 4.5e-133 478.4 333 67.9
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 5.8e-133 478.0 300 77.0
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 9.9e-133 477.2 329 72.6
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.3e-132 476.9 330 70.9
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 1.3e-132 476.9 331 67.7
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 6.4e-132 474.6 329 72.3
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 6.4e-132 474.6 333 67.0
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.4e-131 473.4 329 68.1
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 4.2e-131 471.9 333 68.2
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 5.5e-131 471.5 330 71.2
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 9.3e-131 470.7 329 69.0
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.6e-130 469.9 330 68.2
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 4.6e-130 468.4 328 67.7
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.8e-129 466.5 330 66.4
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 3.0e-129 465.7 321 68.2
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.5e-128 463.4 321 67.9
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 2.5e-128 462.6 333 66.1
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.4e-128 461.1 331 66.5
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.3e-127 460.3 333 65.5
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 6.2e-127 458.0 328 66.5
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.8e-126 456.4 293 74.1
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.4e-126 456.1 331 65.6
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 2.4e-126 456.1 324 69.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 6.9e-126 454.5 321 67.0
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.2e-125 453.8 368 60.6
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.5e-125 453.4 347 66.9
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 4.5e-125 451.8 323 66.9
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.2e-124 449.5 321 66.4
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.9e-124 449.1 347 66.3
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 6.5e-124 448.0 380 59.5
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 1.4e-123 446.8 336 67.3
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.9e-123 446.4 331 66.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 7.1e-123 444.5 315 69.8
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.2e-122 443.7 384 60.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.2e-122 443.7 333 65.8
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 3.0e-121 439.1 320 67.5
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 6.7e-121 438.0 322 67.4
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 9.7e-120 434.1 330 66.4
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 5.3e-118 428.3 319 65.5
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 6.9e-118 427.9 325 67.7
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 6.9e-118 427.9 327 64.2
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 3.4e-117 425.6 329 64.1
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 6.3e-111 404.8 333 63.1
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.1e-110 404.1 331 59.8
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 4.1e-110 402.1 295 69.2
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 7.7e-109 397.9 328 59.1
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 5.0e-108 395.2 328 57.9
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.1e-107 394.0 259 71.4
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.2e-103 379.8 277 66.4
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 7.0e-102 374.8 326 58.6
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.2e-101 374.0 245 76.3
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 1.5e-101 373.6 258 70.2
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 4.5e-101 372.1 329 56.5
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 1.7e-100 370.2 236 76.7
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.9e-99 366.7 194 89.7
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 3.6e-98 362.5 264 66.7
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.2e-95 353.2 295 58.0
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.4e-94 350.5 323 54.2
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 3.2e-91 339.3 333 53.5
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 9.1e-86 321.2 324 52.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 1.8e-78 297.0 188 72.9
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.4e-78 295.4 211 64.5
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 9.1e-78 294.7 224 62.1
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 5.0e-76 288.9 331 44.7
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 6.1e-74 282.0 325 45.5
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.5e-72 277.3 327 44.3
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 5.7e-72 275.4 345 43.2
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 4.7e-66 255.8 165 69.7
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.4e-64 249.2 170 74.1
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.1e-62 244.6 328 44.5
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 6.4e-55 218.8 169 66.3
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.6e-53 214.2 123 74.0
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.7e-52 210.7 152 61.8
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 6.0e-45 185.7 315 37.1
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 5.1e-44 182.6 200 53.5
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 8.9e-41 171.8 195 43.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 1.5e-40 171.0 141 60.3
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 2.2e-39 167.2 360 32.8
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 2.1e-34 150.6 309 34.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 4.0e-33 146.4 144 56.2
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.4e-30 137.1 120 58.3
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 3.9e-28 129.8 353 29.2
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.1e-27 128.3 78 83.3
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 2.1e-18 97.4 245 28.2
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 1.2e-16 91.7 60 71.7
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 8.4e-15 85.5 59 55.9
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 5.5e-14 82.8 64 64.1
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 1.3e-12 78.2 67 49.3
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.5e-11 74.7 65 60.0
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 2.4e-09 67.4 96 43.8
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 1.2e-08 65.1 66 48.5


User provided reference genes

Program Settings