Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 6.9e-303 1043.1 509 100.0
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 1.8e-226 789.3 511 77.1
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 2.9e-224 781.9 518 77.0
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 7.6e-209 730.7 516 72.1
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.7e-208 729.6 516 71.9
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 3.8e-208 728.4 516 71.9
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 5.7e-172 608.2 515 60.0
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 8.2e-171 604.4 515 60.0
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 3.4e-164 582.4 522 57.1
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 7.5e-156 554.7 518 56.0
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 1.7e-155 553.5 536 55.6
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 5.4e-154 548.5 512 55.5
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 1.5e-151 540.4 526 54.2
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 2.8e-150 536.2 515 54.8
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 7.5e-148 528.1 491 56.8
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 1.3e-147 527.3 520 54.6
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 1.3e-147 527.3 647 47.3
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 2.0e-145 520.0 514 52.7
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 1.7e-144 516.9 514 52.7
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 3.0e-144 516.2 517 55.1
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 1.1e-143 514.2 516 51.4
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 3.3e-143 512.7 525 54.1
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 1.6e-142 510.4 516 54.7
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 8.9e-141 504.6 524 51.7
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 2.6e-140 503.1 522 52.7
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 3.4e-140 502.7 518 52.9
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 4.4e-140 502.3 515 53.6
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 2.2e-139 500.0 517 51.8
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 2.9e-139 499.6 513 52.4
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.2e-137 494.2 516 53.7
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 3.5e-137 492.7 513 52.4
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 3.6e-134 482.6 512 52.1
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 1.1e-133 481.1 518 50.4
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 1.5e-132 477.2 312 78.2
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 7.5e-132 474.9 505 50.7
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.4e-130 469.9 476 52.7
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 3.0e-128 463.0 524 49.8
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 1.9e-127 460.3 499 50.1
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 1.8e-125 453.8 516 48.4
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 9.9e-124 448.0 469 51.2
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 2.9e-123 446.4 510 47.6
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 3.8e-123 446.0 430 53.3
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 4.9e-123 445.7 516 47.5
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 1.9e-122 443.7 525 45.3
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 4.2e-122 442.6 518 49.6
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 1.2e-121 441.0 526 48.5
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 5.6e-119 432.2 883 34.2
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 6.2e-118 428.7 508 46.5
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 5.8e-116 422.2 517 46.6
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 7.6e-116 421.8 352 61.1
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 1.7e-115 420.6 508 47.0
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 1.9e-114 417.2 515 46.8
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 5.4e-114 415.6 518 46.9
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 1.0e-112 411.4 513 47.0
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 9.6e-111 404.8 465 47.7
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 1.3e-110 404.4 474 47.3
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 4.8e-110 402.5 514 45.7
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 1.8e-109 400.6 460 50.7
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 4.0e-109 399.4 511 44.0
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 2.6e-108 396.7 441 50.3
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 3.4e-108 396.4 520 44.8
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 9.9e-108 394.8 526 43.2
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 1.4e-106 391.0 518 45.0
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 2.1e-105 387.1 520 43.8
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 2.7e-105 386.7 478 45.8
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 1.0e-104 384.8 522 44.1
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 1.5e-103 380.9 524 43.9
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 1.9e-103 380.6 523 44.0
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 3.3e-103 379.8 521 43.6
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 5.6e-103 379.0 669 38.1
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 1.3e-102 377.9 510 43.9
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 3.7e-102 376.3 506 43.5
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 4.0e-101 372.9 525 41.1
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 6.9e-101 372.1 441 48.5
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 3.4e-100 369.8 521 42.8
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 6.4e-99 365.5 513 42.7
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 1.1e-95 354.8 513 39.8
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 7.4e-95 352.1 520 39.0
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 4.0e-93 346.3 403 47.9
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 2.6e-92 343.6 396 44.9
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 4.5e-92 342.8 403 48.6
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 1.1e-90 338.2 370 49.2
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.5e-89 333.2 510 41.0
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 1.9e-87 327.4 527 38.3
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 5.7e-87 325.9 367 47.7
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 6.1e-81 305.8 482 40.5
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 1.8e-80 304.3 332 50.3
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 8.8e-80 302.0 275 58.2
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 4.2e-74 283.1 454 38.1
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 1.1e-69 268.5 541 32.9
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 2.9e-59 233.8 335 42.7
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 5.2e-56 223.0 473 33.6
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 5.7e-55 219.5 340 41.2
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 1.1e-53 215.3 287 43.6
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 1.9e-50 204.5 533 28.9
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 2.5e-50 204.1 276 41.3
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 2.3e-48 197.6 148 66.9
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 3.8e-43 180.3 297 39.7
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 8.6e-43 179.1 170 53.5
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 8.0e-41 172.6 265 41.5
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 5.7e-39 166.4 139 61.2
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 6.3e-38 162.9 117 65.8
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 3.2e-37 160.6 278 37.4
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 3.1e-32 144.1 521 25.1
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 3.4e-31 140.6 104 60.6
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 2.0e-28 131.3 576 24.1
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 2.3e-27 127.9 133 48.9
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 3.9e-27 127.1 140 47.9
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 2.8e-25 120.9 251 30.3
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 1.1e-21 109.0 208 36.1
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 4.6e-20 103.6 173 36.4
Gohir.A08G150800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 5.1e-19 100.1 112 52.7
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 5.6e-18 96.7 257 33.1
Gohir.A07G182300 Gossypium hirsutum HOM05D005725 ORTHO05D007531 6.2e-17 93.2 93 55.9
CiPaw.09G139700 Carya illinoinensis HOM05D005725 ORTHO05D007531 9.9e-15 85.9 142 42.3
Gorai.010G246300 Gossypium raimondii HOM05D005725 ORTHO05D047266 1.4e-13 82.0 79 55.7
Gohir.D06G220100 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.6e-12 78.6 68 57.4
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 3.5e-12 77.4 136 33.8
Gohir.D11G000066 Gossypium hirsutum HOM05D005725 ORTHO05D047266 1.3e-11 75.5 63 58.7
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 1.3e-11 75.5 137 36.5
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 1.7e-11 75.1 64 60.9
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 1.7e-11 75.1 136 34.6
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 1.7e-11 75.1 136 34.6
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 3.0e-11 74.3 74 52.7
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 1.1e-10 72.4 90 44.4
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 1.5e-10 72.0 116 35.3
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 1.5e-10 72.0 116 35.3
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 1.5e-10 72.0 116 35.3
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 3.3e-10 70.9 122 34.4
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 2.4e-08 64.7 132 32.6
SHI12772 Sapria himalayana HOM05D005725 ORTHO05D007531 2.0e-07 61.6 84 39.3
Atru.chr1.2967 Acer truncatum HOM05D005725 ORTHO05D007531 3.4e-07 60.8 110 35.5
Cpa.g.c41422 Carica papaya HOM05D005725 ORTHO05D007531 1.7e-06 58.5 44 56.8


User provided reference genes

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