Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 3.9e-215 751.1 363 100.0
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 2.1e-200 702.2 361 93.6
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.6e-200 701.0 363 93.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 8.7e-199 696.8 363 92.8
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.3e-198 694.5 363 92.6
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.7e-192 675.2 367 89.6
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 8.5e-186 653.7 365 87.1
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 1.0e-183 646.7 368 84.2
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 8.7e-183 643.7 363 85.4
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.9e-182 642.5 368 84.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 2.5e-182 642.1 363 84.8
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 1.7e-181 639.4 368 84.2
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 3.7e-181 638.3 362 84.3
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 6.3e-181 637.5 362 85.4
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 1.1e-180 636.7 361 85.3
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.1e-180 636.7 360 85.6
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.4e-180 636.3 362 85.6
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 6.9e-180 634.0 365 83.6
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.1e-180 633.6 363 83.2
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.2e-179 633.3 366 83.1
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.0e-178 630.2 369 82.1
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.7e-178 629.4 359 84.4
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.4e-177 626.3 359 83.3
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 3.2e-177 625.2 362 82.6
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 5.5e-177 624.4 365 82.2
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 7.2e-177 624.0 362 84.0
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 7.2e-177 624.0 389 78.9
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 9.4e-177 623.6 360 83.6
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.2e-176 623.2 362 82.6
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 2.7e-176 622.1 358 83.2
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 4.6e-176 621.3 361 82.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 7.9e-176 620.5 360 82.2
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.0e-175 620.2 357 84.3
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.4e-175 619.8 360 81.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.8e-175 619.4 362 82.0
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 2.3e-175 619.0 359 83.8
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 3.0e-175 618.6 364 81.9
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 3.0e-175 618.6 364 82.1
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 5.1e-175 617.8 358 83.2
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 6.7e-175 617.5 362 82.6
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 6.7e-175 617.5 362 81.8
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-174 616.7 360 82.2
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.1e-174 616.7 358 83.5
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 2.6e-174 615.5 360 83.1
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 5.7e-174 614.4 359 82.5
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.7e-173 612.8 360 82.2
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.2e-173 612.5 358 81.0
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 2.2e-173 612.5 362 82.3
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.8e-173 612.1 360 82.2
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.8e-173 612.1 360 81.9
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.8e-173 612.1 362 82.0
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 3.7e-173 611.7 362 81.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 3.7e-173 611.7 355 83.4
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.8e-173 611.3 360 81.9
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 6.3e-173 610.9 358 81.8
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 8.2e-173 610.5 361 81.4
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 8.2e-173 610.5 360 81.4
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.1e-172 610.1 366 80.1
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 1.1e-172 610.1 361 80.6
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.1e-172 610.1 362 80.9
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-172 609.8 366 79.8
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.4e-172 609.8 366 79.8
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.8e-172 609.4 357 82.4
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 3.1e-172 608.6 362 80.7
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 5.3e-172 607.8 358 82.1
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 6.9e-172 607.4 361 80.3
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 6.9e-172 607.4 361 82.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 9.1e-172 607.1 361 81.2
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 9.1e-172 607.1 361 81.2
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 9.1e-172 607.1 358 81.6
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.4e-171 605.1 361 80.6
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.3e-170 603.2 360 79.4
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 2.2e-170 602.4 369 77.2
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 3.8e-170 601.7 358 80.2
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.4e-169 599.7 360 78.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.4e-169 599.7 361 80.3
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.4e-169 599.7 369 77.0
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.9e-169 599.4 361 79.8
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.9e-169 599.4 356 80.6
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 5.5e-169 597.8 361 80.3
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 5.5e-169 597.8 355 80.6
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.2e-168 596.7 439 69.9
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 2.1e-168 595.9 358 81.3
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.4e-167 593.2 358 78.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.8e-167 592.8 388 74.5
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 6.7e-167 590.9 361 77.8
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 5.7e-166 587.8 358 79.3
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 5.7e-166 587.8 361 77.8
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 2.8e-165 585.5 362 77.6
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.1e-164 583.6 356 77.5
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.8e-164 582.8 367 75.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-163 580.1 358 78.2
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-163 580.1 452 65.7
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.6e-163 578.9 416 71.4
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 7.7e-163 577.4 353 78.8
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 3.2e-161 572.0 370 74.3
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 5.5e-161 571.2 455 63.3
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 4.0e-159 565.1 352 77.0
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 5.2e-159 564.7 332 81.3
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.7e-154 549.7 387 73.9
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 9.4e-153 543.9 371 70.6
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.2e-152 543.5 357 71.1
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.7e-152 541.6 359 70.2
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.2e-150 537.0 359 70.2
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.4e-150 535.4 356 69.9
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 4.4e-150 535.0 360 70.8
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.1e-148 530.4 360 69.4
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.8e-148 529.6 358 69.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.9e-146 522.3 362 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 4.7e-144 515.0 361 67.0
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.6e-142 509.2 274 89.4
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 5.4e-140 501.5 519 52.8
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 2.7e-139 499.2 358 64.5
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 4.5e-139 498.4 355 65.4
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 8.6e-130 467.6 255 87.5
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.6e-128 463.4 270 81.9
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 9.8e-126 454.1 344 69.2
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 6.6e-122 441.4 385 56.1
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 4.9e-117 425.2 273 75.1
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 5.4e-108 395.2 345 57.1
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.0e-106 389.4 347 55.3
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 4.6e-99 365.5 350 51.4
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 7.8e-99 364.8 302 59.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.1e-87 326.2 199 79.4
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 7.6e-86 321.6 271 61.3
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 2.2e-85 320.1 223 68.2
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.3e-81 305.8 181 81.2
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 8.2e-80 301.6 162 88.9
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.1e-79 301.2 164 87.2
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.2e-75 287.7 179 73.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.4e-71 274.2 182 71.4
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.5e-68 262.3 351 44.2
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 2.6e-62 243.4 174 64.4
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.4e-55 220.3 118 89.8
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 4.7e-51 206.1 170 64.1
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.5e-44 183.7 106 78.3
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 3.1e-39 166.8 107 77.6
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.1e-36 158.3 90 84.4
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.5e-28 129.4 177 46.3
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 4.4e-25 119.8 88 68.2
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.1e-20 105.1 112 53.6
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 4.3e-20 103.2 77 63.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 4.7e-19 99.8 55 80.0
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.4e-18 98.2 62 71.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.8e-18 97.8 323 27.2
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 4.4e-17 93.2 48 89.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.1e-15 88.6 86 54.7
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 7.8e-14 82.4 47 76.6
QL11p038890 Quercus lobata HOM05D000018 ORTHO05D001172 2.6e-09 67.4 362 23.2
QL11p040202 Quercus lobata HOM05D000018 ORTHO05D001172 2.6e-09 67.4 362 23.5
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 4.4e-09 66.6 74 48.6
A01p26330 Brassica napus HOM05D001438 ORTHO05D001336 1.7e-08 64.7 293 23.5
Dinv21663 Davidia involucrata HOM05D001438 ORTHO05D001336 2.2e-08 64.3 273 23.8
BcaC09g49746 Brassica carinata HOM05D001438 ORTHO05D001336 4.9e-08 63.2 327 22.9
C01p33350 Brassica napus HOM05D001438 ORTHO05D001336 6.4e-08 62.8 327 22.9
BolC1t03277H Brassica oleracea HOM05D001438 ORTHO05D001336 1.4e-07 61.6 327 22.6
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.4e-07 60.8 37 75.7
BcaB05g23632 Brassica carinata HOM05D001438 ORTHO05D001336 7.0e-07 59.3 327 22.6
Gorai.004G196400 Gossypium raimondii HOM05D001438 ORTHO05D001336 2.1e-06 57.8 271 23.2
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 2.7e-06 57.4 43 55.8
Gorai.004G196100 Gossypium raimondii HOM05D001438 ORTHO05D001336 3.5e-06 57.0 257 22.6
QL11p038974 Quercus lobata HOM05D000018 ORTHO05D001172 7.8e-06 55.8 364 22.5


User provided reference genes

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