Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 6.4e-57 223.8 108 100.0
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 2.4e-51 205.3 108 91.7
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 2.1e-47 192.2 108 83.3
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.0e-46 189.9 108 82.4
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 6.7e-46 187.2 108 80.6
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.5e-45 185.3 108 79.6
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 9.6e-45 183.3 108 78.7
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 9.6e-45 183.3 95 91.6
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 1.6e-44 182.6 103 82.5
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 1.6e-44 182.6 103 82.5
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 1.6e-44 182.6 107 75.7
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 4.8e-44 181.0 103 81.6
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 1.5e-42 176.0 103 75.7
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 2.6e-42 175.3 103 77.7
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 5.8e-42 174.1 96 80.2
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 1.7e-41 172.6 106 74.5
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 1.7e-41 172.6 100 78.0
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 3.8e-41 171.4 107 73.8
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 3.8e-41 171.4 106 75.5
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 4.9e-41 171.0 96 80.2
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 6.5e-41 170.6 105 71.4
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 8.4e-41 170.2 109 73.4
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 4.2e-40 167.9 106 73.6
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 5.5e-40 167.5 102 73.5
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 5.5e-40 167.5 108 74.1
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 5.5e-40 167.5 106 71.7
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 7.1e-40 167.2 108 72.2
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 7.1e-40 167.2 108 71.3
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 1.2e-39 166.4 108 71.3
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 3.5e-39 164.9 105 70.5
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 2.3e-38 162.2 107 71.0
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 5.1e-38 161.0 103 69.9
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 8.7e-38 160.2 109 71.6
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 8.7e-38 160.2 101 72.3
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 1.1e-37 159.8 79 91.1
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 1.5e-37 159.5 100 70.0
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 1.9e-37 159.1 106 67.0
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 1.9e-37 159.1 104 69.2
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 3.3e-37 158.3 97 73.2
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 7.4e-37 157.1 109 69.7
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 7.4e-37 157.1 97 76.3
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 7.4e-37 157.1 99 74.7
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 1.6e-36 156.0 98 73.5
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 2.2e-36 155.6 110 69.1
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 2.2e-36 155.6 100 69.0
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 2.2e-36 155.6 96 74.0
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 3.7e-36 154.8 104 71.2
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 4.8e-36 154.5 90 77.8
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 6.3e-36 154.1 96 72.9
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 6.3e-36 154.1 104 68.3
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 6.3e-36 154.1 98 72.4
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 8.2e-36 153.7 103 66.0
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.4e-35 152.9 97 70.1
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 1.4e-35 152.9 103 68.9
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 4.1e-35 151.4 91 72.5
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 4.1e-35 151.4 104 68.3
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 4.1e-35 151.4 89 74.2
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 5.3e-35 151.0 97 72.2
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 6.9e-35 150.6 107 68.2
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 6.9e-35 150.6 100 70.0
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 9.0e-35 150.2 103 65.0
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 1.2e-34 149.8 95 70.5
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 1.5e-34 149.4 91 76.9
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.4e-34 148.3 87 73.6
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 3.4e-34 148.3 104 66.3
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 1.0e-33 146.7 99 65.7
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 2.2e-33 145.6 97 66.0
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 8.5e-33 143.7 103 63.1
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 1.1e-32 143.3 85 71.8
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 2.5e-32 142.1 87 70.1
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 3.2e-32 141.7 87 70.1
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 3.2e-32 141.7 87 70.1
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 5.5e-32 141.0 114 57.9
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 7.2e-32 140.6 83 71.1
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 9.3e-32 140.2 83 72.3
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 9.3e-32 140.2 88 69.3
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 9.3e-32 140.2 88 69.3
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 9.3e-32 140.2 88 69.3
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 9.3e-32 140.2 88 69.3
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 9.3e-32 140.2 83 72.3
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 9.3e-32 140.2 88 69.3
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 9.3e-32 140.2 96 66.7
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 1.2e-31 139.8 95 68.4
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.2e-31 139.8 83 69.9
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 1.6e-31 139.4 87 69.0
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 1.6e-31 139.4 87 69.0
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 2.1e-31 139.0 79 74.7
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.1e-31 139.0 83 72.3
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 2.7e-31 138.7 83 75.9
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 4.6e-31 137.9 85 69.4
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 3.0e-30 135.2 81 71.6
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 3.0e-30 135.2 81 71.6
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 8.8e-30 133.7 84 70.2
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 8.8e-30 133.7 77 74.0
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 2.5e-29 132.1 97 60.8
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 1.3e-28 129.8 92 64.1
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 2.8e-28 128.6 93 62.4
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 1.1e-27 126.7 93 61.3
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 1.1e-27 126.7 103 54.4
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 1.4e-27 126.3 93 61.3
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 1.4e-27 126.3 92 62.0
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 1.8e-27 125.9 103 53.4
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 6.9e-27 124.0 93 60.2
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 6.9e-27 124.0 93 60.2
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 9.1e-27 123.6 93 58.1
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 9.1e-27 123.6 74 73.0
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 1.2e-26 123.2 103 50.5
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 3.4e-26 121.7 93 55.9
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 4.5e-26 121.3 93 55.9
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 5.9e-26 120.9 93 55.9
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 5.9e-26 120.9 93 55.9
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 2.2e-25 119.0 93 54.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.4e-24 116.3 94 62.8
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.4e-24 116.3 94 62.8
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 1.9e-24 115.9 97 59.8
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 5.5e-24 114.4 59 81.4
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 1.6e-23 112.8 97 49.5
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 4.7e-23 111.3 80 55.0
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 1.7e-20 102.8 78 60.3
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 1.7e-17 92.8 102 44.1
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 3.2e-08 62.0 94 36.2
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 4.2e-08 61.6 68 41.2
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.2e-07 60.1 68 39.7
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 1.6e-07 59.7 64 45.3
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 1.6e-07 59.7 63 41.3
GSVIVG01031677001 Vitis vinifera HOM05D001848 ORTHO05D001295 2.7e-07 58.9 58 46.6
Mapoly0005s0134 Marchantia polymorpha HOM05D010866 ORTHO05D008854 4.7e-07 58.2 84 40.5
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 4.7e-07 58.2 99 33.3
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 4.7e-07 58.2 80 35.0
Solyc01g109390.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.0e-06 57.0 86 32.6
arahy.Tifrunner.gnm1.ann1.FN75LP Arachis hypogaea HOM05D001848 ORTHO05D001295 1.4e-06 56.6 59 44.1
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 1.4e-06 56.6 97 37.1
Dinv44234 Davidia involucrata HOM05D000090 ORTHO05D001584 1.8e-06 56.2 58 43.1
arahy.Tifrunner.gnm1.ann1.202QP6 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.3e-06 55.8 32 68.8
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.3e-06 55.8 97 37.1
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 2.3e-06 55.8 86 32.6
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 2.3e-06 55.8 96 32.3
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 3.0e-06 55.5 60 41.7
CSS0044367 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 4.0e-06 55.1 58 43.1
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 4.0e-06 55.1 85 37.6
Prupe.1G179900 Prunus persica HOM05D001848 ORTHO05D001295 4.0e-06 55.1 58 46.6
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 5.2e-06 54.7 65 35.4
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 5.2e-06 54.7 59 44.1
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 6.7e-06 54.3 57 42.1
Phvul.008G112900 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 6.7e-06 54.3 53 45.3
CAN.G862.20 Capsicum annuum HOM05D001848 ORTHO05D001295 8.8e-06 53.9 64 37.5
Solyc03g121900.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 8.8e-06 53.9 58 41.4


User provided reference genes

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