Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 1.0e-113 413.7 247 100.0
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 5.5e-104 381.3 250 92.0
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 2.0e-101 372.9 247 88.3
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 3.7e-100 368.6 247 83.8
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 2.1e-95 352.8 247 87.9
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 6.1e-95 351.3 178 94.4
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 1.0e-94 350.5 247 81.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 1.4e-94 350.1 247 78.9
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 2.3e-94 349.4 246 79.3
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 4.0e-94 348.6 178 93.8
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 1.5e-93 346.7 247 77.7
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 5.7e-93 344.7 247 78.5
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 6.3e-92 341.3 247 75.3
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 2.0e-90 336.3 248 69.8
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 7.7e-90 334.3 249 74.7
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.0e-89 334.0 278 70.9
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 6.5e-89 331.3 247 82.6
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 8.5e-89 330.9 179 89.4
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 1.1e-88 330.5 247 81.0
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 1.9e-88 329.7 247 79.8
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.9e-88 329.7 251 81.3
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 2.5e-88 329.3 247 78.1
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.5e-88 329.3 249 73.9
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 2.5e-88 329.3 180 85.6
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 3.2e-88 328.9 247 78.1
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 7.2e-88 327.8 180 85.0
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 7.2e-88 327.8 180 85.6
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 9.4e-88 327.4 180 86.1
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 1.2e-87 327.0 249 81.1
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 2.1e-87 326.2 180 86.1
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 2.7e-87 325.9 180 85.6
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 2.7e-87 325.9 250 78.4
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 8.0e-87 324.3 180 84.4
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.0e-86 323.9 249 77.5
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 2.3e-86 322.8 180 85.6
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 3.0e-86 322.4 245 72.2
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 4.0e-86 322.0 180 86.1
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 5.2e-86 321.6 246 78.5
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 6.8e-86 321.2 256 74.2
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 6.8e-86 321.2 180 85.0
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 8.8e-86 320.9 180 85.0
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 8.8e-86 320.9 180 84.4
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.2e-85 320.5 246 78.0
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.5e-85 320.1 248 80.6
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 1.5e-85 320.1 245 73.1
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 1.5e-85 320.1 249 80.3
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 2.0e-85 319.7 246 65.9
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 2.6e-85 319.3 180 82.8
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 4.4e-85 318.5 180 83.9
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 7.5e-85 317.8 246 76.0
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 7.5e-85 317.8 247 74.1
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 7.5e-85 317.8 254 79.1
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.1e-83 313.9 180 81.1
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 1.1e-83 313.9 180 81.1
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 1.8e-83 313.2 246 74.8
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 1.8e-83 313.2 180 81.7
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 2.4e-83 312.8 246 77.6
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 4.1e-83 312.0 246 74.0
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.2e-82 310.5 246 73.6
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 1.2e-82 310.5 246 73.6
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.2e-82 310.5 168 87.5
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.2e-82 310.5 180 80.6
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 1.0e-81 307.4 168 85.7
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 1.7e-81 306.6 250 69.2
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 8.6e-81 304.3 179 82.7
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.9e-80 303.1 211 70.1
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 3.3e-80 302.4 180 80.6
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 2.8e-79 299.3 180 80.0
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 8.0e-79 297.7 276 68.8
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 8.0e-79 297.7 180 77.2
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.4e-78 297.0 179 78.2
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 2.3e-78 296.2 300 60.7
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 6.8e-78 294.7 250 69.2
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.2e-77 293.9 180 77.8
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.5e-77 293.5 169 83.4
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.5e-77 293.5 170 82.9
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.6e-77 292.7 300 54.3
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 3.7e-76 288.9 161 83.9
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 3.2e-75 285.8 228 62.7
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 4.1e-75 285.4 212 68.4
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 5.9e-74 281.6 207 70.5
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 3.6e-71 272.3 151 84.1
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 3.6e-71 272.3 169 75.1
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 4.7e-71 271.9 162 81.5
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.0e-70 270.8 194 70.6
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.8e-70 270.0 145 85.5
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 4.4e-69 265.4 150 83.3
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 1.1e-67 260.8 180 68.9
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 1.4e-67 260.4 181 66.9
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 2.0e-66 256.5 146 81.5
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 1.3e-65 253.8 197 66.5
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 6.2e-63 245.0 256 69.9
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 8.1e-63 244.6 188 70.2
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.4e-62 243.8 185 63.8
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 2.6e-61 239.6 248 62.9
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 3.2e-59 232.6 279 49.8
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 3.0e-57 226.1 154 74.0
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 5.6e-56 221.9 125 83.2
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.7e-55 218.8 266 46.2
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 1.8e-54 216.9 343 39.1
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 6.8e-54 214.9 170 85.3
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 3.7e-52 209.1 131 76.3
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 1.7e-49 200.3 188 53.2
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.2e-47 194.1 115 82.6
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 7.3e-40 168.3 118 65.3
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.3e-39 167.5 113 67.3
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 2.1e-39 166.8 98 81.6
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 2.6e-37 159.8 145 60.0
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 8.7e-33 144.8 81 82.7
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 1.1e-27 127.9 107 61.7
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 2.4e-27 126.7 166 68.7
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 6.2e-23 112.1 112 54.5
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 5.1e-17 92.4 123 64.2
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 2.3e-09 67.0 36 86.1
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 5.1e-09 65.9 34 88.2
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.2e-07 60.5 35 77.1
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 4.8e-07 59.3 29 89.7


User provided reference genes

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